Transcript Information: R_Transcript_40024.p1


Annotated TAIR IDAT5G08450.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2727970-2732572 | Reverse length=918
E-Value2.3e-313
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.382695188567
Replicate 214.778949322151
Replicate 318.180832995005
Condition 2: 8 Hour
Replicate 115.957414413435
Replicate 216.173647545324
Replicate 318.790441576687
Condition 3: 24 Hour
Replicate 118.945763246164
Replicate 216.809105076799
Replicate 319.33768083988


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_40024.p1 GENE.R_Transcript_40024~~R_Transcript_40024.p1 ORF type:complete len:824 (+),score=216.15,Rxt3|PF08642.6|1e+04,Rxt3|PF08642.6|2.4e-10,Rxt3|PF08642.6|0.095 R_Transcript_40024:359-2830(+)
ATGAGTGCTGCTCCAAAGCGAGGGGCTCATGAGGAAGGTGTTCATTCATCGTCTTCCTTGATGCGCCCTGCCAATTTTGGGAGCGAGGAGGAGGAATCTCAACCTCAGCCTCACCCTCAACCTCAACCTCAGTCCCAATCTCAATCACAATCTCCTCTTTTTGGGAGGATAACTTATCCGCCCCCGGTTCAGCATTCTATGCTGGGGCTGCTCCCCCGCCCCGAGTCTCGTGACGGGGAGAGGAGATCCCCTTTACATTCCTTGTATAGAATGCCCTCAGCAATGAGTGATTCCTCTCATGCTGGTGCTGCTCACCCCCCTGTGGTGGGTCCTGAGATTAGGGCGGAACTGAGGGAGTCGAAGGAAAGTAGGGAGGCTAATAAGGGTGTTGATAGTAGCAGTAGAGATTTGAAGATGGAGTCGAGAGAGGTGCATCATCATGTTGGGAAGTCAGAGAAGGATGTAAGAGTTGAGAGCCGGGGAGATGAGAGTAAAGAGATGAAGCACGAGAGAGAGGGGCGTAATGATCATAAAAGTGAAGTGAAGGTGGAAAAGGATGTTCATGGAGTTGGAGGGAGTCACTCTAATTGGAAGGACCATCATAGAGTGAAAAGACATCCAGATGTTCCTACTGGAAGTCCTGGAATTATGGGAGCTTGGAGTGGTTCTCAAGTGCGTGCTAAATATGAAGCTCCCAAGGAAGTTGGCGTAGGTAATGTTATTAGGGATCATGTGGAAGGAAGTGAGGCTGTTGGAGAGAATAAAGTTGATCCAAAAGGTGACGACAAGTACAAGGATAAGGATAGGAAAAGGAAAGAAGGAAAGCATCATGATTGGCCTGAAAGCGATAAAGATAGGAATGATAGCAGGAATAGTGTGCTAGTTGGTTGTAGTAATAATGATCACAAGGATGCAACAAGAGACGAAAGAGAACCGGAGCGGTGGGAGCGGGAGAGGAAAGATATTTCAAAAGAGAAGGAACGAGTAAAAGAAAGGGAAAATCTTGTTGACAGAGATGGTCAGAATGGTGGTGAGAAAGTCAGTTACCATAATGAGAAAGATGCAGCAGATAAAACACCCGTACAGGAATGTTTTCCAGCAGAACAGAAGAAGCCAAAGGAACATGAGTCTTGGAGAAATGTAGAGAGAGAAGCTAAAGAGAGGAGGAAAGAGAGAGAAGGTGATGTGGAGGGAGAGAGACCTGAGAAGCGCAGTAGAGGCTATGACAAAGAGTCAGACGAAGGAGGTGCTGAGGTTGATGGGGCTACAGACAGAGAAAGAGATGCCTTCAGTTATGGAGTTCAGCAGCGGAAGAGAATGCTTCGCCCAAGAGGCAGCCCACAAGTTGGTAATCGTGATGCGCGCTTCAAGTCTCGTGGCCAGGAAGCAGAAGGGTCTCAAGGTAAACCTGAGGTGTCGACTGTTTATAAAGTTGGTGAATGCATGCAAGAATTGACAAAGCTGTGGAAGGAATATGAATTATCTCATCCTGATAAAAGCACCGACAGCTTATATAATGGCCCTACACTGGAAATTTGGATTCCAGCTGAGCATGTTACTGCTACAAATCGTCAAGTTAGGGGTGGGCAGCTTTGGGGAACAGATATATATACGGATGATTCAGATCTTGTTGCTGTTCTCATGCATACGGGCTATTGTCGCCCGACGGCGTCTCCTCCTCCTGCAGCTATCCAGGAGCTGCGTGCAACAATACGGGTTCTACCCCCACAAGATAGTTACGTGTCTACTTTGAGAAACAACGTTCGGTCGCGTGCTTGGGGAGCTGCAATCGGTTGTAGTTACCGTGTTGAGCGTTGCTGCATTATGAAGAAAGGGGGTGGAGCTATTGATCTTGAGCCTTGTCTCACACATACATCAACGATTGAGCCTACTTTGGCTCCACTTGCTGTTGAACGTACAATGACTACTAGAGCAGCGGCATCGAATGCTTTGCGGCAACAAAGATTTGTGCGAGAAGTCACAATACAATATAACCTTTGCAATGAGCCTTGGGTCAAATATAGTATAAGCATTGTTGCTGACAAGGGTTTGAAGAAGCCCTTGTATACTTCTGCTCGTTTGAAGAAGGGGGAAGTTTTGTACCTAGAGACTCATACATGCAGGTATGAGCTCTGCTTTACCGGTGAGAAGAACATCAAAGCTGCCTCTGCATTGCAGGGGCATGAAGCAGAAACAGACAAGTCCCAGAACCACCAGAACCATTCTGTGAATGGTGAGCGAAGTATGGCAGAAGGTGATAGTGTTGTGGTTGACATGTTCCGTTGGTCAAGGTGCAAGAAGCCACTTCCACAGAAGGTTATGCGATCAATTGGTATCCCTTTGCCCTTGGATCATGTGGAGGTCTTGGAGGAGAATCTTGATTGGGAAGATGTGCAGTGGTCACAAACTGGTGTCTGGATTGCCGGAAAAGAGTACCAGCTTGCAAGGGTGCATTTCTTGTCTCCAAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_40024.p1 GENE.R_Transcript_40024~~R_Transcript_40024.p1 ORF type:complete len:824 (+),score=216.15,Rxt3|PF08642.6|1e+04,Rxt3|PF08642.6|2.4e-10,Rxt3|PF08642.6|0.095 R_Transcript_40024:359-2830(+)
MSAAPKRGAHEEGVHSSSSLMRPANFGSEEEESQPQPHPQPQPQSQSQSQSPLFGRITYPPPVQHSMLGLLPRPESRDGERRSPLHSLYRMPSAMSDSSHAGAAHPPVVGPEIRAELRESKESREANKGVDSSSRDLKMESREVHHHVGKSEKDVRVESRGDESKEMKHEREGRNDHKSEVKVEKDVHGVGGSHSNWKDHHRVKRHPDVPTGSPGIMGAWSGSQVRAKYEAPKEVGVGNVIRDHVEGSEAVGENKVDPKGDDKYKDKDRKRKEGKHHDWPESDKDRNDSRNSVLVGCSNNDHKDATRDEREPERWERERKDISKEKERVKERENLVDRDGQNGGEKVSYHNEKDAADKTPVQECFPAEQKKPKEHESWRNVEREAKERRKEREGDVEGERPEKRSRGYDKESDEGGAEVDGATDRERDAFSYGVQQRKRMLRPRGSPQVGNRDARFKSRGQEAEGSQGKPEVSTVYKVGECMQELTKLWKEYELSHPDKSTDSLYNGPTLEIWIPAEHVTATNRQVRGGQLWGTDIYTDDSDLVAVLMHTGYCRPTASPPPAAIQELRATIRVLPPQDSYVSTLRNNVRSRAWGAAIGCSYRVERCCIMKKGGGAIDLEPCLTHTSTIEPTLAPLAVERTMTTRAAASNALRQQRFVREVTIQYNLCNEPWVKYSISIVADKGLKKPLYTSARLKKGEVLYLETHTCRYELCFTGEKNIKAASALQGHEAETDKSQNHQNHSVNGERSMAEGDSVVVDMFRWSRCKKPLPQKVMRSIGIPLPLDHVEVLEENLDWEDVQWSQTGVWIAGKEYQLARVHFLSPN*

Click here to download the sequence:
Link to NCBI Protein BLAST