Transcript Information: R_Transcript_40028.p1


Annotated TAIR IDAT1G05910.1
Annotated Gene Namecell division cycle protein 48-related / CDC48-related
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:1790796-1796503 | Forward length=1210
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.6108480380872
Replicate 24.8957719720695
Replicate 35.634910610592
Condition 2: 8 Hour
Replicate 16.1803264890883
Replicate 26.4144196307247
Replicate 38.4649337989305
Condition 3: 24 Hour
Replicate 18.7563431413359
Replicate 26.3797663938288
Replicate 38.3657332817709


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_40028.p1 GENE.R_Transcript_40028~~R_Transcript_40028.p1 ORF type:complete len:1248 (+),score=301.20,AAA|PF00004.25|2.4e-39,AAA|PF00004.25|0.16,AAA|PF00004.25|1e+03,Bromodomain|PF00439.21|2.2e-14,IstB_IS21|PF01695.13|1.7e-07 R_Transcript_40028:286-4029(+)
ATGCATCCCAAACGATCGGGACATGAAAATGAGAATGGAGCAGGAACCACTTCACTCAACAATGACGACAACAACAATGTCCCTCAGGTTCGTACCAGTGACCGGATTCGAAGGCGGCCGTCGTCGTATTCTCGAGGAATGTTTTACTACTCCTCCTCTGCAGTAGCCTCATTTCGACAGAAGCGAAAAAAGGCCAAAACCAGAACGGCCGCCTCACAGATTGCCAAGATGCTCAAGCCCGGCGCCCGGCCTGGCGGTCGGCCTGTTGGCCGGCCCGGAAGACGGTCTCGGCTATACGGGACTGGTGGGAGTAAGAGTAACAACACTGAGTTGGATATGACCAACCTTCGGCGCTCTACCAGACAGAGGAGGGTGTCCGTTAACCTGGGAGACTATACAGATAGTTCCGGATCAGATGAGGATTTAATGAAACCTAGACGATATCGGACGAGGAATCGGGTTGAAAACAGTGCTGATCGGGATGATTTGTCAACTCCTAAACGTAGAAAAGTAATTGAGACTAGATCTACACCTCGACGTGAAGGATTGCGTCCTCGTCGCTCCAAAACAGACGGAAGAAGTGTAGGAATGGCATATGATGATGAAGAAGGTAGTTCAGAAGAAAAAGATGACCAAGATGAAATGGAAAATGTAAATGAGGATGAAGATAATGATGATGAAGGTGAGGGTGATGATGAAGGTGAGGCTGAAGGGGATGGAGAAGGTGAAGAGGAGGGCGAGGGTGAGGATGAAAGAGAAGAAGACGGGGATGATGAAGAGGGTGAGGAAGAGCAAGATGGGAAGAGGCGATATGATCTTCGCAACCGTGCAGATGTGCGTAGGCTGTCTATGGAGCAAGGTAAGCAAAGAGCAAGATCTCCACGGAGAGTTTTGCATCATGGGATGGGGACAAAGGTCAATAGAGATGTGAGGAAGGGTGGCTCAAGGGTCCATAAACGTCATCGTTTTGCAAGGATTGAAGATTCTGACGACTCCCTCCTTGTAGATGAATTGGAACAAGGCCCTGCCATTCCTTGGGCTCGAAGTGGTACCAGATCGGGGCCGCCTTGGCTTTTGGGAGGATTGGACATGCATGGGGCAACATCATGGGGATTGAATGTTGCTGCATCTGGATGGGGTCACCAGACTGATTCCTATGCAACTCTGACATCTGGTGTCCAGACTGCTGGTCCAAGTTCCAAAGGTGGAGCAGATATTCAACCTTTGCAGGTTGATGATAATGTGAGTTTTGATGATATAGGTGGGCTTTCAGAATACATTGATGCTTTGAAAGAAATGGTCTTCTTCCCTTTGCTATACCCAGATTTTTTTGCAAGCTATAACATTACCCCACCAAGAGGAGTCTTGTTGTGTGGACCTCCAGGAACTGGGAAGACACTTATTGCACGAGCGTTAGCTTGTGCTGCTTCAAAAGCTGGCCAGAAAGTCAGCTTTTACATGCGTAAGGGGGCTGATGTTCTCAGCAAATGGGTTGGAGAGGCTGAACGGCAGTTGAAACTTCTTTTTGAAGAAGCTCAGCGAAATCAGCCTTCGATCATTTTCTTTGATGAAATAGATGGGCTTGCTCCTGTGCGGTCAAGCAAACAAGAGCAGATCCATAATTCTATAGTCTCAACTTTGCTTGCTCTGATGGATGGCCTTGATTCTCGTGGACAAGTTGTCTTAATTGGAGCCACAAACAGAATCGATGCTATTGACGGAGCTTTGCGTCGACCCGGTCGGTTTGACCGTGAGTTTAATTTTCCTTTGCCTGGATGTGAGGCTCGGGCTGAAATAATAGATATCCACACTCGCAAATGGAGGAACCCTCCATCCAAGGAATTAAGGATGGAACTTGCAGCTAGCTGTGTGGGTTATTGTGGTGCTGATTTAAAGGCACTATGTACTGAAGCTGCCATTCGTGCATTTCGTGAGAAATATCCTCAGGTGTACACCAGCGATGACAAATTCGTGATAGATGTTGATTCAGTTAGTGTAGAAAAATATCACTTTTTTGATGCTATGTCAACAATAACACCTGCTGCTCACAGAGGCTCCATTGTGCATTCCAGACCACTGTCTTCTGTTGTTGCACCATGCTTGCAAAGACACCTCCGTAAAGCTATGGAATACATATCAGATATATTCCCCACTTCTGTTTTCTCATCCGAATCAGCAAAATTGTCAATGCTTTCTTATGGTTCTGCAATTCCACTGGTTTATAGGCCTCGGTTTCTGTTGAATGGCAGTGAAGGTGCTGGGCTGGATCATCTGGGGCCTGCTATTTTACATGAGCTGGAGAAGTTTCCCGTTCATTCTCTTGGGCTTCCATCTCTGCTCTCAGATCCTAGTGCAAAAACACCTGAAGAGGCTTTGGTACACATATTTAGTGAAGCACGTAGGACAACACCGTCGATACTTTATCTACCCCATTTTGATCTTTGGTGGGATAATGCACATGAACAGCTAAGAGCAGTCTTAGTCACTTTATTAGAAGAATTGCCATCTGAGTACCCTATATTGTTACTGGGAACATCCGCAAGTCTGCCTGCTGATATGGATGAGCGACATCGGATATTTACTAAACGATGCATTTATGAAGTGGACAGACCAACAATTGAAGACCGGTCTTTGTTCTTTGACCGGTTAATTGAGGCTTCTTTGTCAGTTCAATCTGAGGCTGTTCTGAAAAAACCTAAGACATCAACATCACTTCCAGAGCTTCCTAAAGCTCCTAAGGTGGTTACTGGCCCAAAGATTTCTGAGTTGAAAGCAAAGGTAGAAGCAGAGCAGCATGCACTTCGTAGATTACGAATGTGCCTTCGAGATATATGTAATCGGATCTTATATGATAAGCGTTTCAGTGCCTTCCATTATCCCGTTACTGATGAGGATGCCCCTAACTACCGCTTGATAATCCAAAATCCTATGGATGTGGCTACTTTGCTCCAGCGTGTGGATTCTGGGCAGTATATAACATGCACTGCTTTTCTTCAGGATGTTGATCTAATTTTACGCAATGCGAAGGCATATAATGGAGATGACTATAATGGAGCTAGGATTGTGAGCAGAGCACATGAGCTTCGAGATGCTGTGCATGGAATGGTTTCTCAGATGGACCCTGCACTTGTAGCATTTTGTGATAAGATTGCTGCGCAAGGAGGTCCTAGTCAGATGCCTGATGATTATGGAAGCTCTTTTGTTCAACAAACTCCTGTTGTTCAGACAATAGCTGTGACGAGGGCAAGTGCCCGGCTTCGTCATGTTCAGCCAGAAGTTAATTTGGATCGGAGTTATGAAGCATTAAAAAGATCTAAAAAGAATGTTGATGCAGTACACACAGCTGCATCTGGTGAAGAGAGGACTAAACTTCAAGAATCCGATCCTCCACTACCTACAGAAGAGCAGCAAACCAACTCTGTAACTGAGCTTGGGCTGGAGAGCCCAACTGCAGATTGCAATGAACACGAGGCCCCCACAGAAGCTCCGGAACATACATGTGAAAGAGGTCAGGAAGATGATGTTATCATGACGGATGGAGATACATCCAGCAGCCAAGTGGAAGTAATTAAGCAGCAATTTTTGAAATGCACCGAAGGGTATGGAATACCACAACTTGAAAGGCTCTATACTCGTGTTATGAAGGGTGTTTTTGAGACGAAAAATGTAGGAGGTTCAAACAATCTGAAAACCTCAATTCTTGAATTTTTGTCCAAGTTTTCTCAGGATGAGACTAACTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_40028.p1 GENE.R_Transcript_40028~~R_Transcript_40028.p1 ORF type:complete len:1248 (+),score=301.20,AAA|PF00004.25|2.4e-39,AAA|PF00004.25|0.16,AAA|PF00004.25|1e+03,Bromodomain|PF00439.21|2.2e-14,IstB_IS21|PF01695.13|1.7e-07 R_Transcript_40028:286-4029(+)
MHPKRSGHENENGAGTTSLNNDDNNNVPQVRTSDRIRRRPSSYSRGMFYYSSSAVASFRQKRKKAKTRTAASQIAKMLKPGARPGGRPVGRPGRRSRLYGTGGSKSNNTELDMTNLRRSTRQRRVSVNLGDYTDSSGSDEDLMKPRRYRTRNRVENSADRDDLSTPKRRKVIETRSTPRREGLRPRRSKTDGRSVGMAYDDEEGSSEEKDDQDEMENVNEDEDNDDEGEGDDEGEAEGDGEGEEEGEGEDEREEDGDDEEGEEEQDGKRRYDLRNRADVRRLSMEQGKQRARSPRRVLHHGMGTKVNRDVRKGGSRVHKRHRFARIEDSDDSLLVDELEQGPAIPWARSGTRSGPPWLLGGLDMHGATSWGLNVAASGWGHQTDSYATLTSGVQTAGPSSKGGADIQPLQVDDNVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYNITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEIIDIHTRKWRNPPSKELRMELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFVIDVDSVSVEKYHFFDAMSTITPAAHRGSIVHSRPLSSVVAPCLQRHLRKAMEYISDIFPTSVFSSESAKLSMLSYGSAIPLVYRPRFLLNGSEGAGLDHLGPAILHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFSEARRTTPSILYLPHFDLWWDNAHEQLRAVLVTLLEELPSEYPILLLGTSASLPADMDERHRIFTKRCIYEVDRPTIEDRSLFFDRLIEASLSVQSEAVLKKPKTSTSLPELPKAPKVVTGPKISELKAKVEAEQHALRRLRMCLRDICNRILYDKRFSAFHYPVTDEDAPNYRLIIQNPMDVATLLQRVDSGQYITCTAFLQDVDLILRNAKAYNGDDYNGARIVSRAHELRDAVHGMVSQMDPALVAFCDKIAAQGGPSQMPDDYGSSFVQQTPVVQTIAVTRASARLRHVQPEVNLDRSYEALKRSKKNVDAVHTAASGEERTKLQESDPPLPTEEQQTNSVTELGLESPTADCNEHEAPTEAPEHTCERGQEDDVIMTDGDTSSSQVEVIKQQFLKCTEGYGIPQLERLYTRVMKGVFETKNVGGSNNLKTSILEFLSKFSQDETNF*

Click here to download the sequence:
Link to NCBI Protein BLAST