Transcript Information: R_Transcript_40055.p1


Annotated TAIR IDAT4G30790.1
Annotated Gene NameINVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14993383-14997785 | Reverse length=1148
E-Value7E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.884018389633
Replicate 222.887859012361
Replicate 319.604865510221
Condition 2: 8 Hour
Replicate 114.559162941605
Replicate 225.584072016492
Replicate 322.893923304993
Condition 3: 24 Hour
Replicate 120.269055029865
Replicate 27.3517529635258
Replicate 315.972108825574


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_40055.p1 GENE.R_Transcript_40055~~R_Transcript_40055.p1 ORF type:5prime_partial len:111 (+),score=11.12,ATG11|PF10377.5|8.9e-09 R_Transcript_40055:3-335(+)
TACCTCTCTGCAGAATCTGTGGCCTTGTTCACCGAGAATCTCCCTAGCCGACCCTCCTACATCATTGGACAGATTGTCCATATTGAGAGACGGGTTGTAAAGCCGCTTCCTGGTGCAACAATTAGGCCCGATCATAATCAGGGAGGAGATCAAGTAGATGGCTCATCATCATCATCATCATCATCGGACAGTATAAGCACACGGTTGACCTTGAATCCAGGAATCGGATCAGCATCGAACCCATTTGGTCTGCCCGTTGGATGTGAATACTTCATAGTCACAGTTGCAATGCTACCTGATACCGCAATTCATTCGCCATTAAAATTCAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_40055.p1 GENE.R_Transcript_40055~~R_Transcript_40055.p1 ORF type:5prime_partial len:111 (+),score=11.12,ATG11|PF10377.5|8.9e-09 R_Transcript_40055:3-335(+)
YLSAESVALFTENLPSRPSYIIGQIVHIERRVVKPLPGATIRPDHNQGGDQVDGSSSSSSSSDSISTRLTLNPGIGSASNPFGLPVGCEYFIVTVAMLPDTAIHSPLKFN*

Click here to download the sequence:
Link to NCBI Protein BLAST