Transcript Information: R_Transcript_40057.p1


Annotated TAIR IDAT4G30790.1
Annotated Gene NameINVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14993383-14997785 | Reverse length=1148
E-Value1E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.3998490356968
Replicate 29.6469488399207
Replicate 37.8419462040882
Condition 2: 8 Hour
Replicate 17.7207682266089
Replicate 216.11595087653
Replicate 313.572825959388
Condition 3: 24 Hour
Replicate 17.6526024092347
Replicate 25.1660966770722
Replicate 35.9155958613236


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_40057.p1 GENE.R_Transcript_40057~~R_Transcript_40057.p1 ORF type:5prime_partial len:111 (+),score=18.56,ATG11|PF10377.5|1.8e-08 R_Transcript_40057:3-335(+)
TACCTCTCTGCAGAATCTGTGGCCTTGTTCACCGAGAATCTCCCTAGCCGACCCTCCTACATCATTGGACAGATTGTCCATATTGAGAGACGGGTTGTAAAGCCGCTTCCTGGTGCAACAATTAGGCCCGATCATAATCAGGGAGGAGATCAAGTAGATGGCTCATCATCATCATCATCATCATCATCGGACAGTGTAAGCACACGGTTGGCCTTGAATCCAGGAGTCGGGTCAGCATCGAACCCATTTGGTCTGCCCGTTGGATGTGAATACTTCATAGTCTCAGTTGCAATGCTACCTGATACAGCAATTCATTCGCCACCACCTTCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_40057.p1 GENE.R_Transcript_40057~~R_Transcript_40057.p1 ORF type:5prime_partial len:111 (+),score=18.56,ATG11|PF10377.5|1.8e-08 R_Transcript_40057:3-335(+)
YLSAESVALFTENLPSRPSYIIGQIVHIERRVVKPLPGATIRPDHNQGGDQVDGSSSSSSSSSDSVSTRLALNPGVGSASNPFGLPVGCEYFIVSVAMLPDTAIHSPPPS*

Click here to download the sequence:
Link to NCBI Protein BLAST