Transcript Information: R_Transcript_401523.p1


Annotated TAIR IDAT1G16630.1
Annotated Gene Nameunknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16270.1); Has 10587 Blast hits to 5736 proteins in 617 species: Archae - 88; Bacteria - 963; Metazoa - 3686; Fungi - 820; Plants - 541; Viruses - 438; Other Eukaryotes - 4051 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:5682212-5684749 | Reverse length=845
E-Value0.0004
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.5112874217008
Replicate 20.35287899859325
Replicate 30.51331624865328
Condition 2: 8 Hour
Replicate 10.20576357098525
Replicate 20.25054209345866
Replicate 30.35591393373308
Condition 3: 24 Hour
Replicate 10.77169099925056
Replicate 20.49423549334627
Replicate 30.30655048581089


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_401523.p1 GENE.R_Transcript_401523~~R_Transcript_401523.p1 ORF type:5prime_partial len:357 (+),score=83.22 R_Transcript_401523:1-1071(+)
TCGTGTTCGGCTCATAAAAGACGAAAAGACGCGGGAAAACAAAGGGCAAGCTCCAAACGGACGCCATTAACAGCTAAGGATTCAAGCTTTCTACTTCAACCCATCTTCAAGCTTATGGCTTCAGGTGGAAAACCTTGCATTGTTTTGCATGTTGGGGGGAAGTTTGTTAGAGATCCTAATCTCATGTATGTTGGTGGGAAGATTAGTGTTTGTACTAATCTCCCTGAGGATCTTGATCGGGCTTACATATTAGGATTAGTGAAGGATTTAGGATATAATAATGTTGACAAAATCCATTACCTGGTCCCTATGAAAAGCTTGGAGAATGGTTGTAGAATTTTGTTTAGTGATGAGAGTTATTTGCAACTCATTTTCATGGTACATGAGTTTAATGAAGTTCATTTGTACTGTGAGCACGATGAGGGACTAGTTCATGATCAGGATGTTCTTGGTGACCTAGAAAACATGCAAACAAGTTTTTTGGGATTGCTACAAAGTGACAACATTATTGAGGACTTAACTAGGGAACCTGGTCCAAATGTTAAGGAATTTGAGGGAGTGCATATTGAAGACTTGACTATTATTGAGCCCAATCAAATGGTAAAGGAAGAGAGGGCACAAAATGAGAATGGTGAGGATTTAAATGAAGAGGTAGAAGCTGGATTAGATGATGTTGATTTGAATGACTCTGAGGTTGAGGATGATAATAATGAGTTAGTTGAAGCAAGAAAACAGATTGCTGAAGAGAATATGAATGAATTACTCGAGGCTGTAAAAAGACATGATTATGAAGAAGAGCTGACTTCTTTGCAAAACATTGATGATTGGAGTAAGGTTAACCCTACAGAGGAGGATGAATTGCAAAGTGATTATGGAGATAGCTCAGAACTTGAGAGCCCTGAAAATTCTGATGAGGAGGGGGAGAATCTGAAAAGGAAGTGGACTGTACACCTATCCAAATGGCTTCCAACAACTATCTTATATGAGGGCAAAGCGAGCCACATTCAAACCAACATCCCAGCCTGCACCAACATCAAACAACAATGGCTTTGCTGTTTACTAAGATTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_401523.p1 GENE.R_Transcript_401523~~R_Transcript_401523.p1 ORF type:5prime_partial len:357 (+),score=83.22 R_Transcript_401523:1-1071(+)
SCSAHKRRKDAGKQRASSKRTPLTAKDSSFLLQPIFKLMASGGKPCIVLHVGGKFVRDPNLMYVGGKISVCTNLPEDLDRAYILGLVKDLGYNNVDKIHYLVPMKSLENGCRILFSDESYLQLIFMVHEFNEVHLYCEHDEGLVHDQDVLGDLENMQTSFLGLLQSDNIIEDLTREPGPNVKEFEGVHIEDLTIIEPNQMVKEERAQNENGEDLNEEVEAGLDDVDLNDSEVEDDNNELVEARKQIAEENMNELLEAVKRHDYEEELTSLQNIDDWSKVNPTEEDELQSDYGDSSELESPENSDEEGENLKRKWTVHLSKWLPTTILYEGKASHIQTNIPACTNIKQQWLCCLLRF*

Click here to download the sequence:
Link to NCBI Protein BLAST