Transcript Information: R_Transcript_40217.p1


Annotated TAIR IDAT1G03090.2
Annotated Gene Namemethylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)
Annotated Gene Symbol(s)MCCA
Annotation TypeOrtholog
Chromosome Positionchr1:739715-743819 | Forward length=734
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5827318901915
Replicate 22.1996124245646
Replicate 32.1504284273939
Condition 2: 8 Hour
Replicate 12.2653589338948
Replicate 25.8716329188419
Replicate 35.8282722536208
Condition 3: 24 Hour
Replicate 11.7179311530935
Replicate 21.7104078323305
Replicate 32.2632184438152


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_40217.p1 GENE.R_Transcript_40217~~R_Transcript_40217.p1 ORF type:complete len:735 (+),score=166.65,CPSase_L_D2|PF02786.13|2e-76,CPSase_L_chain|PF00289.18|9.6e-44,CPSase_L_chain|PF00289.18|1.3e+04,Biotin_carb_C|PF02785.15|7.6e-34,ATP-grasp_4|PF13535.2|2.2e-16,Dala_Dala_lig_C|PF07478.9|1.6e-10,Dala_Dala_lig_C|PF07478.9|7.7e+03,ATPgrasp_Ter|PF15632.2|3.8e-08 R_Transcript_40217:247-2451(+)
ATGGCGGCTCTTACTCTTCTACTCCGCCGTAAACACCACCGGAACTTGACGTCGCTTCTACTTTTCCGGCGATTCTCATCGTCGCCCCCGAATATTGGTGGAGGTGATAAGAAGAAGACGATAGAGAAGATACTGATAGCCAATAGAGGCGAGATTGCTTGTAGAATAATGACAACAGCTAAGCGATTAGGGATTCGAACTGTTGCGGTTTATAGTGACGCTGATCGTGATAGTCTTCACGTTAACTTCGCTGACGAGGCTGTTCATATTGGTCCTCCACCTGCGAAATTGAGTTATTTGAAAGGAATTTCGATCATCGAAGCTGCAAGAATGACCGGTGCTCAGGCTATCCACCCTGGTTATGGGTTTTTGTCAGAAAATGCTGAGTTTGCGCAGCTTTGTGAAGATGAAGGTCTATCATTCATCGGACCCCCAGCATCTGCAATACGAGATATGGGCGACAAAAGTGCATCAAAGAGGATAATGGGTGAAGCAGGTGTTCCTGTGGTGCCTGGATATCATGGTAATGATCAAGATATTGACCTAATGAAATCGGAAGCTGAAAAAATTGGTTATCCTATATTAATAAAGCCAACGCATGGAGGTGGAGGAAAGGGGATGAGAATTGTGGAAAACCCAAATGAATTTGTTGATTCGTTCTTGGCAGCAAGGAGGGAGGCTGCTGCTTCTTTTGGTGTAGACACAATCTTGCTTGAGAAATATATCACCAGACCAAGGCATATAGAAGTCCAGGTATTTGGAGATAAACATGGTCATGTATTATATTTGTATGAGAGGGATTGCAGTGTGCAAAGAAGACACCAGAAGATAATTGAAGAAGCCCCAGCACCCAATGTCAATGATGACTTCCGCTCTCAATTGGGTGAAGCTGCTGTGTCCGCAGCCAAGGCAGTTGGCTATTACAATGCTGGAACAGTTGAATTCATTGTGGATACTCTTTCAGGTCAATTTTACTTCATGGAGATGAACACGCGATTACAGGTTGAGCATCCTGTCACAGAGATGATTGTTGGACAAGATCTTGTAGAATGGCAGATTCGTGTTGCAAATGGCGAACCTCTTCCTATTTTGCAGTCTGAGGTGCCTTTGTCAGGTCATGCATTTGAGGCCCGCATATATGCTGAAAATGTTCCTAAAGGATTTCTCCCAGCAACTGGAGTTCTTCATCATTATCAACCTGTTCCAGTCTCAGAAACAGTTCGTGTTGAGACGGGAGTTAGAGAAGGAGATGCTGTTAGCATGCATTATGATCCCATGATTGCCAAGCTTGTTGTGTGGGGAGAAAATCGTGCTGCTGCATTAGTCAAATTGAAGGATTCCCTATCAAAATTTCAGGTTGCTGGTCTCCCAACTAACATCAATTTTCTTCAAAAACTTGCAAGCCATTGGGCTTTCGAGGATGGACAAGTTGAAACTCATTTTATTGAGCACCATAAAGATGAGCTTTTTGCTGATTCAAGTAACAAGCAGCTGGCAGAGGAACAGCAAAAATCTGCTACACATAGTGCCATGCTTGTTGCTGCATGTCTTTGTAAAATGGAGATCAACACAGCCAAGAAAATCTATCAGGGGGAAAGGAGCTCGCTTTCAATATGGTATGCTGATCCCCCTTTTAGAGTTAACTATCATGCCAAGCGTGATGTGGTGCTTGAGTGGGAAAATGACACTGCCACTGGTGGTCAAGTACCAGTGAAATTGGCAGTTACATATCAGCCAGATGGGAGCTATCTCATTGAGGTGCCAGAATGCAGTTCCCAAGGATTAGAAGTTAAAGTTCTGCAACAAGGTGATCGAGATTTCAGGGTTGAAGCTGGAGGATCAAGTGCGAACATAACTTTAGCTGTTTATACTAAGGATAAAAGCAAACACATACATATTTGGCATGGTTTGCAGCACTATCACTTCCGCCAAAAAGTTGGACTCGAGTTGTCTGGTGAAGGTGATATTGAAACTGGCCACAGGCCAACAGTCGCTGAGACAGCATCTCACTCTCCAGGTACAGTATTGGCCCCCAATGGCCGGTTTATTGGTCAAAGTTCTTGCCAAGAATGGGGACAAAGTGGAGGCAGGGAAACCAATTTTAGTAATGGAAGCCATGAAGATGGAGCATGTTGTGAAGGCACCTTCTTCTGGGCTCATCGACAGGCTTCAGGTGGCTCCTGGGCAGCAAGTTTCAGATGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_40217.p1 GENE.R_Transcript_40217~~R_Transcript_40217.p1 ORF type:complete len:735 (+),score=166.65,CPSase_L_D2|PF02786.13|2e-76,CPSase_L_chain|PF00289.18|9.6e-44,CPSase_L_chain|PF00289.18|1.3e+04,Biotin_carb_C|PF02785.15|7.6e-34,ATP-grasp_4|PF13535.2|2.2e-16,Dala_Dala_lig_C|PF07478.9|1.6e-10,Dala_Dala_lig_C|PF07478.9|7.7e+03,ATPgrasp_Ter|PF15632.2|3.8e-08 R_Transcript_40217:247-2451(+)
MAALTLLLRRKHHRNLTSLLLFRRFSSSPPNIGGGDKKKTIEKILIANRGEIACRIMTTAKRLGIRTVAVYSDADRDSLHVNFADEAVHIGPPPAKLSYLKGISIIEAARMTGAQAIHPGYGFLSENAEFAQLCEDEGLSFIGPPASAIRDMGDKSASKRIMGEAGVPVVPGYHGNDQDIDLMKSEAEKIGYPILIKPTHGGGGKGMRIVENPNEFVDSFLAARREAAASFGVDTILLEKYITRPRHIEVQVFGDKHGHVLYLYERDCSVQRRHQKIIEEAPAPNVNDDFRSQLGEAAVSAAKAVGYYNAGTVEFIVDTLSGQFYFMEMNTRLQVEHPVTEMIVGQDLVEWQIRVANGEPLPILQSEVPLSGHAFEARIYAENVPKGFLPATGVLHHYQPVPVSETVRVETGVREGDAVSMHYDPMIAKLVVWGENRAAALVKLKDSLSKFQVAGLPTNINFLQKLASHWAFEDGQVETHFIEHHKDELFADSSNKQLAEEQQKSATHSAMLVAACLCKMEINTAKKIYQGERSSLSIWYADPPFRVNYHAKRDVVLEWENDTATGGQVPVKLAVTYQPDGSYLIEVPECSSQGLEVKVLQQGDRDFRVEAGGSSANITLAVYTKDKSKHIHIWHGLQHYHFRQKVGLELSGEGDIETGHRPTVAETASHSPGTVLAPNGRFIGQSSCQEWGQSGGRETNFSNGSHEDGACCEGTFFWAHRQASGGSWAASFRW*

Click here to download the sequence:
Link to NCBI Protein BLAST