Transcript Information: R_Transcript_404872.p1


Annotated TAIR IDAT5G66540.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:26556653-26559310 | Reverse length=524
E-Value7E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.39930146144974
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.19692195438015
Replicate 30.19542593470444


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_404872.p1 GENE.R_Transcript_404872~~R_Transcript_404872.p1 ORF type:internal len:112 (+),score=26.82,Mpp10|PF04006.8|5.6e-31 R_Transcript_404872:3-335(+)
AAAGTCGTCGAACTTGATATGAAAAAGAGCAAAGTTGGCCTTGCTGAAATTTACGAGAAAGAATTTATGAAAGAAGCGTATGGAATTGATGAAGAAAATGATAAATTGACTGAAGAACACAAAACAGTTTTTAGCTTGTTTAAACGAGTTAATTATCATCTCGATAGATTGGCCAATTTCTATTTCACTCCTAAACCGGATATGGAAGTTCAAAAGAAAAAGAATGTGGCGGCTGTTCAAATGGAAGAGGCATTACCTACTGTGGTCAGTGAGAATAGCACTTTGGCTCCAGAAGAAGTTTATGCAAAACCAAAAGATATGAAGGGAGACGCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_404872.p1 GENE.R_Transcript_404872~~R_Transcript_404872.p1 ORF type:internal len:112 (+),score=26.82,Mpp10|PF04006.8|5.6e-31 R_Transcript_404872:3-335(+)
KVVELDMKKSKVGLAEIYEKEFMKEAYGIDEENDKLTEEHKTVFSLFKRVNYHLDRLANFYFTPKPDMEVQKKKNVAAVQMEEALPTVVSENSTLAPEEVYAKPKDMKGDA

Click here to download the sequence:
Link to NCBI Protein BLAST