Transcript Information: R_Transcript_40493.p2


Annotated TAIR IDAT3G24255.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:8789471-8793208 | Forward length=746
E-Value4E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2795890153823
Replicate 20.82253548022611
Replicate 31.0862988963124
Condition 2: 8 Hour
Replicate 10.55534951426742
Replicate 20.87599330924232
Replicate 31.0479280358162
Condition 3: 24 Hour
Replicate 11.0887207551282
Replicate 20.90949521198257
Replicate 31.7149129445404


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_40493.p2 GENE.R_Transcript_40493~~R_Transcript_40493.p2 ORF type:complete len:485 (+),score=56.61,RVT_1|PF00078.23|2.1e-26 R_Transcript_40493:3528-4982(+)
ATGAAGGTTAAAAAAGGCAAAAAGGGTTGGTTTGCGCTTAAAATTGATCTTGAAAAGGCCTATGATAGATTAGAATGGAGCTTCATTAGGAATTCCCTTGCTTATCATCATCTGGATAATGACTCCATTAAACTTATTATGAGTTGTGTATCCACTACCTCTTGCTCTGTTCTTGTTAATGGGAACACCACTGAATGGTTCAATCCTTCGAGGGGAATAAGACAAGGAGACCCCCTCTCCCCCTACATCTTTATCCTCTGCATGAACATGCTCTCTAAGCTTATTCAGGATAGCTGTGATACCAACAATTGGACTCCCTTTTGTATAGGTAAATCTAAAATCCAGGTGTCTCACCTCCTTTTTGCGGATGGCCTTATTCTCTTTGGGGAGGCTAAAGACTTGACTTTTAATTCAGTGAAAGAGACTCTTAATTTATTTTGCCAGGCTTCGGGCCAAAAGGTCCATTGTGGTAAAAGTAAACTCTTTTTCTCTCCTAACACTGACCCAAGGATGAGAACTTTGGGGGAGCAGATTCTTGGTGTGGATAGTAGTAATGACTTGGGTAACTACTTGGGCTTTCCTTTAACTCCCAACAGGCCAAAGAAATCTCAAGTGAATTTCATTGTTCATAAGGTGAGAAATAGACTAGCTAATTGGAAGACTAATTTTCTCTCTAGGGCGGGGAAAATTTGTCTTATTAACTCCACCTTGAATGCTATTCCCAACTACTACATGCAACATCTCCATCTCCCTTGTTCTATTCTTGATGAACTTGACTCTATTGTTGCGAAATTCTTGTGGAGAGACATCAATGATAAAAGGAAATTGCACTTGGTGGGTAAAGAAAAAATCTTTCTTCCTAAAGAGAGAGGAGGTCTAGGGATTAGAAGCAATAGGACCATGAACCGAGTGTACATGACCAAAAGAAACTGGCAACTCATGAATGACAAGGAGAACCTGGCTCATAAAGTCCTTAAGAGCAAGTATGTTCTCCATAGGAATGGTGCAGTTAATTTTAATAATGGTTCTTTCATTTGGCAAGATCTAGGAAAAGGTTGGACTCAATTTCATGAGAACATTTACTGGATCATTGGTAAGGGGGATCACATTTCTTTGTGGGTGGATAATTGGTGTAAATTGGGGCCCTTGAGAAGCCTTATACATGGTCCTCTTCATAGGCATGAAGAAGCCCTAAAAGTCAAGGATTGCATCTCAAACTGGCATTGGGATTTCTCTAGCATTTCCTTTGTGCTCCCTGATGATATTCTTAACATGTTGACTGCCATTCCCTTCTCCCCTGACCAGAGTGATTTTCCAACTTCACTCCTTGAAATAAATAACAAATTTGATTCAAAAAAGGCTTATCTTGACACCTATACCTATGGTTTTGATGATGACAATTGTTCGTGGATTTGGAATTGCCCCACGTCCCCAAAAAATTCTTTTTTCATCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_40493.p2 GENE.R_Transcript_40493~~R_Transcript_40493.p2 ORF type:complete len:485 (+),score=56.61,RVT_1|PF00078.23|2.1e-26 R_Transcript_40493:3528-4982(+)
MKVKKGKKGWFALKIDLEKAYDRLEWSFIRNSLAYHHLDNDSIKLIMSCVSTTSCSVLVNGNTTEWFNPSRGIRQGDPLSPYIFILCMNMLSKLIQDSCDTNNWTPFCIGKSKIQVSHLLFADGLILFGEAKDLTFNSVKETLNLFCQASGQKVHCGKSKLFFSPNTDPRMRTLGEQILGVDSSNDLGNYLGFPLTPNRPKKSQVNFIVHKVRNRLANWKTNFLSRAGKICLINSTLNAIPNYYMQHLHLPCSILDELDSIVAKFLWRDINDKRKLHLVGKEKIFLPKERGGLGIRSNRTMNRVYMTKRNWQLMNDKENLAHKVLKSKYVLHRNGAVNFNNGSFIWQDLGKGWTQFHENIYWIIGKGDHISLWVDNWCKLGPLRSLIHGPLHRHEEALKVKDCISNWHWDFSSISFVLPDDILNMLTAIPFSPDQSDFPTSLLEINNKFDSKKAYLDTYTYGFDDDNCSWIWNCPTSPKNSFFI*

Click here to download the sequence:
Link to NCBI Protein BLAST