Transcript Information: R_Transcript_40688.p1


Annotated TAIR IDAT5G54580.1
Annotated Gene NameRNA-binding (RRM/RBD/RNP motifs) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:22171332-22172656 | Forward length=156
E-Value4.2E-50
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1101.73477730092
Replicate 297.41430751521
Replicate 3101.62684598496
Condition 2: 8 Hour
Replicate 198.067753519677
Replicate 2109.19374787422
Replicate 3116.18873600156
Condition 3: 24 Hour
Replicate 1119.21744565452
Replicate 2119.00883350601
Replicate 3128.99302102278


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_40688.p1 GENE.R_Transcript_40688~~R_Transcript_40688.p1 ORF type:5prime_partial len:197 (+),score=33.54,RRM_1|PF00076.18|2.8e-18,RRM_6|PF14259.2|9.2e-08 R_Transcript_40688:3-593(+)
ATTCATTTCCTACAAAGTTCGGTTTGCTTCCCACATTTTCCAGCCGCCCTTTCTCTCTCTAAACCACAGAAAAACCCCAGAAGAAGGTTTGACAGAGAGAGAGAGCTTAAACCCTTAAATAATTCAACAGCCATGGCAATGAGAGCAGCGATGTCAATGGCGGCGGCGCCTAGAGGCGGCCTAGGGTTGGGGTTAGGGTTAGGGCGTCTTTTCTCAACATCAAACTTCAACTTCATGCCGCCACCCCCACCTCAACCTGCTTCCGCTAATCCCCCTGCCGAACCTAACCCTAACGTCTTCGTTTCCGGGCTTAGCAAACGTACCACTACAGAAGGTCTACGAGAAGCATTCATGAAGTTTGGTGAAGTGGTTCATGCAAAAGTGGTGACTGATCGCGTCTCAGGTTTTTCTAAAGGATATGGGTTTGTTAGGTATGCTACTACAGAAGATGCTAGAGCGGGAATACAGGGCATGGATGGCAAGTTCTTGGATGGATGGGTGATATTTGCTGAGTTTGCTAGACCAAGGCCAATGCCTGCCTACCAACAGCAAAATGGGAACAATCCTTATGGAACAACGGGTCAACAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_40688.p1 GENE.R_Transcript_40688~~R_Transcript_40688.p1 ORF type:5prime_partial len:197 (+),score=33.54,RRM_1|PF00076.18|2.8e-18,RRM_6|PF14259.2|9.2e-08 R_Transcript_40688:3-593(+)
IHFLQSSVCFPHFPAALSLSKPQKNPRRRFDRERELKPLNNSTAMAMRAAMSMAAAPRGGLGLGLGLGRLFSTSNFNFMPPPPPQPASANPPAEPNPNVFVSGLSKRTTTEGLREAFMKFGEVVHAKVVTDRVSGFSKGYGFVRYATTEDARAGIQGMDGKFLDGWVIFAEFARPRPMPAYQQQNGNNPYGTTGQQ*

Click here to download the sequence:
Link to NCBI Protein BLAST