Transcript Information: R_Transcript_407634.p1


Annotated TAIR IDAT2G19070.1
Annotated Gene Namespermidine hydroxycinnamoyl transferase
Annotated Gene Symbol(s)SHT
Annotation TypeHomolog
Chromosome Positionchr2:8260185-8261958 | Reverse length=451
E-Value5E-68
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.13323329164028
Replicate 20.076628833636124
Replicate 30.083601232102746
Condition 2: 8 Hour
Replicate 10.80428023549346
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.15976426778757


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_407634.p1 GENE.R_Transcript_407634~~R_Transcript_407634.p1 ORF type:5prime_partial len:274 (+),score=64.37,Transferase|PF02458.11|5e-48 R_Transcript_407634:3-824(+)
GTTGATCATGTCCAGCAATTTAGTCAACTTCCTACATTGATAGGTGAAGAACTGAGCTTCGAGTCCGAGGATCGGAAGAAGAAGAAGGAGGAGATAGTTGCAACCATGTTGCCATTGTCAAGAGGCCAAGTCCAAAAGCTTAAAAAGGTTGCAAATGTGATGGGAATTGTACGTCCTCGTTATGGAAGTTCAGAAGTAATTGCAGCTCATGTATGGAGATGTGCATGTAAAGCTCGTGGCCACAAGAGGGAGCAACTTACTGCTCTTTGCTTCACTGTTGATGCTCGTGACCGTATGGATCCACCTTTACCATCCAGGTATTTTGGCAATGCGATTATTGATGTAGTAACAACTAGCCAAGTGGAGGAGCTCATATTCAGTCCTTTAAGCCATGTATGCTCAAGGATAAGAGAGATGGTATTAAAGGTAACAAATGAGTATGTTTGTTCAGCAATTGACTTCTTTAAAACAAAGCAAAATTTGTCCAAGTACCAAGATAGATGTGCTCTAGGAAGCAAAGAAGGTGTTGTCTATGGGAATCCTAACATTGGAGTTGCTAGTTGGTTAAACCTTCCTCTTGTTGGGCTGGACTTTGGGTGGGGAAAGGAGGTTTTGTTTGGGCCTGGATGCTGTGAATTTGATGGTGATATCATGATTTTACCAGGCCTTAAAAAAGATGGATCAGTTGTTGTTGCAGTGGGCCTACAAGCTTCACATATGGAGAAATTCAAAAAATACTTTTATGAAGATATTGATGCACTGGATTTTCAACTAGACCATGTCTTGGAAGAAGTACCATTATCTATCCCATCTAGAATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_407634.p1 GENE.R_Transcript_407634~~R_Transcript_407634.p1 ORF type:5prime_partial len:274 (+),score=64.37,Transferase|PF02458.11|5e-48 R_Transcript_407634:3-824(+)
VDHVQQFSQLPTLIGEELSFESEDRKKKKEEIVATMLPLSRGQVQKLKKVANVMGIVRPRYGSSEVIAAHVWRCACKARGHKREQLTALCFTVDARDRMDPPLPSRYFGNAIIDVVTTSQVEELIFSPLSHVCSRIREMVLKVTNEYVCSAIDFFKTKQNLSKYQDRCALGSKEGVVYGNPNIGVASWLNLPLVGLDFGWGKEVLFGPGCCEFDGDIMILPGLKKDGSVVVAVGLQASHMEKFKKYFYEDIDALDFQLDHVLEEVPLSIPSRI*

Click here to download the sequence:
Link to NCBI Protein BLAST