Transcript Information: R_Transcript_408317.p1


Annotated TAIR IDAT4G33495.1
Annotated Gene NameUbiquitin carboxyl-terminal hydrolase family protein
Annotated Gene Symbol(s)RPD1
Annotation TypeOrtholog
Chromosome Positionchr4:16111349-16112578 | Reverse length=409
E-Value3.6E-210
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9569796746644
Replicate 21.5537262308061
Replicate 32.7488085115383
Condition 2: 8 Hour
Replicate 12.7424168740915
Replicate 22.6385840572599
Replicate 33.6303221240774
Condition 3: 24 Hour
Replicate 13.6732491564327
Replicate 21.984973300152
Replicate 34.2024392998843


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_408317.p1 GENE.R_Transcript_408317~~R_Transcript_408317.p1 ORF type:5prime_partial len:500 (+),score=77.21,PORR|PF11955.4|1.3e+03,PORR|PF11955.4|4.5e-112 R_Transcript_408317:3-1502(+)
AAAAGAAAAAAAGATTACCACCCTTTGGTTCAAATTTGTTTCACCTTTCATCTACCCTTCTGCAAAACCCTAAACCTCAACCCCCAAATCCTCGAAAAGATGAACCCATTCAATTTTTCCAAACCATTTAATCTAACCCTAATTAAATCCACATTACTAAAGAGAAACCCATCAATCTCAACTTTCACAAGACCCATGTCAAGATCAACATCAATACCCAAAAACCAACAAAGGGTAAGAGATCATGGGTATGATAATTACATGGAAATCGAGAAAAAAATCAGAAAAGTATTGAAATTTGAAGATTCAATACTCACACAACCTCACCAATGTGTCCCAATCTCACGGCTTGACACTCTAGCTCGTCGTATTGGGTTCAAGCAACATGAATCAGGCAAGTTTGTTCTTAAATTTCCTCATATTTTTGAGATTTATGAGCACCCAGTTCAAAGAATCTTGTATTTAAGGTTAACTAGAAATGCCCTTGTGCAAATTGATCAAGAAAATCATGCCCTTGTTGCCCAAATCCCTGATGCTGTTACTAGGCTTAGGAAACTCTTGATGTTATCGAATACGGGTCGGGTTAAGTTAGAGCATATTAGGATTGCCCGTCGAGAATTCGGATTGCCTGATGATTTTGAATATTCTATTGTGCTAAAGTATCCTCAGTATTTTAGGTTGTTTGATGCAAAAGATGCAAATTGTAAATACATTGAGATTGTGGAAAGAGATCCAAAATTGGGTGCTTGTGCTATTGAGAAAGTTAGGGAGATGGAGTATAGGAGGAAGGGTATTGGTGAAGAGGATGTAAGGTTTTCTTTTGTTGTGAATTTCCCACCTGGGTTTAAGATTGGCAAGTATTATAAGATTGCAATGTGGAAGTGGCAAAGGTTGCCTTATTGGTCACCATATGAGGATGTTTCGGGGTATGATATGCGTTCGCTCGAGGCTCAGAATCGGATGGAGAAGAGGGCGGTGGCAATGATTCATGAATTGTTGTCGTTAACGGTTGAGAAGAAGATTAGTTTGGAGAGGATTGCGCATTTTAGGGTCACTATGGACTTGCCTAAGAAGCTTAAGGATTTCCTGCTCCAGCATCAGGGTATATTTTACATTTCGACTAGGGGTAATCATGGGAAACTTCATACTATTTTTCTGAGGGAGGCTTATAGGAAGGGGGAGTTAATAGAGCCTAATGATGTGTATTTGTCTCGTAGAAAATTGGCTGAACTAATCCTGATGAGCCCTAGAAAGGTACCTATGGACAGAGAGTTAGTTAGTTTTAGAATGAATGGGCGTGGTGATGATCATCAACTTCATCATGAAGTGGCTGGGAGCCGAAACGAGTACATCAATGACAGTGAAAATATTAGGGGAAATAGGGTGAGAGATATGAACTCAGACTCAGAGCTTGATAGTGACATGGCTTCAGATTTCAGTGATGAGGATGATGATCCCCGTCATGTTAAGGACTCAAAAGCCACTAATTTACCTGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_408317.p1 GENE.R_Transcript_408317~~R_Transcript_408317.p1 ORF type:5prime_partial len:500 (+),score=77.21,PORR|PF11955.4|1.3e+03,PORR|PF11955.4|4.5e-112 R_Transcript_408317:3-1502(+)
KRKKDYHPLVQICFTFHLPFCKTLNLNPQILEKMNPFNFSKPFNLTLIKSTLLKRNPSISTFTRPMSRSTSIPKNQQRVRDHGYDNYMEIEKKIRKVLKFEDSILTQPHQCVPISRLDTLARRIGFKQHESGKFVLKFPHIFEIYEHPVQRILYLRLTRNALVQIDQENHALVAQIPDAVTRLRKLLMLSNTGRVKLEHIRIARREFGLPDDFEYSIVLKYPQYFRLFDAKDANCKYIEIVERDPKLGACAIEKVREMEYRRKGIGEEDVRFSFVVNFPPGFKIGKYYKIAMWKWQRLPYWSPYEDVSGYDMRSLEAQNRMEKRAVAMIHELLSLTVEKKISLERIAHFRVTMDLPKKLKDFLLQHQGIFYISTRGNHGKLHTIFLREAYRKGELIEPNDVYLSRRKLAELILMSPRKVPMDRELVSFRMNGRGDDHQLHHEVAGSRNEYINDSENIRGNRVRDMNSDSELDSDMASDFSDEDDDPRHVKDSKATNLPE*

Click here to download the sequence:
Link to NCBI Protein BLAST