Transcript Information: R_Transcript_408642.p1


Annotated TAIR IDAT5G51451.1
Annotated Gene NameEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant Homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).
Annotated Gene Symbol(s)RGF5
Annotation TypeHomolog
Chromosome Positionchr5:20898369-20898754 | Forward length=88
E-Value0.001
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.1448647694819
Replicate 20.16663730489125
Replicate 30.36359900946274
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.1440604017491
Condition 3: 24 Hour
Replicate 10.36440963853499
Replicate 20
Replicate 30.52113582587851


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_408642.p1 GENE.R_Transcript_408642~~R_Transcript_408642.p1 ORF type:complete len:126 (+),score=21.44 R_Transcript_408642:152-529(+)
ATGGCCATGCCTCTAGTTGTTGTCTTCCTCTTGTGTCTCTTGGTCCTATCGTGTAATGCTCGACGTTATGGGGTGCATAATGAAGTTTCCTTCATCCAATCACATAAGGAAGTAGAACATATTGGAGAAATGTTGGTACCTGTTGACAATCAGGGGAGCTATACAAGTGATGATGATGAAGGAAGAGCTTCTCATCAAAGGCTGAGAGTAAGAAGAATAAGCAATAATAAGGGAATGAAACAGAAGACAAAAGGAATATCAAATGTTCAAAGGAAGTCCATTGTTTCTTGGCATGTCCCTAATAAACACCATGATCAACATCCTGGGATTTACTCTGATTATCCCAAACCCAGATCACGTCCACCATCCCATAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_408642.p1 GENE.R_Transcript_408642~~R_Transcript_408642.p1 ORF type:complete len:126 (+),score=21.44 R_Transcript_408642:152-529(+)
MAMPLVVVFLLCLLVLSCNARRYGVHNEVSFIQSHKEVEHIGEMLVPVDNQGSYTSDDDEGRASHQRLRVRRISNNKGMKQKTKGISNVQRKSIVSWHVPNKHHDQHPGIYSDYPKPRSRPPSHN*

Click here to download the sequence:
Link to NCBI Protein BLAST