Transcript Information: R_Transcript_40886.p2


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value5E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.099200874753906
Replicate 20.11411032834945
Replicate 30.12449313910952
Condition 2: 8 Hour
Replicate 10
Replicate 20.60763265872787
Replicate 30.39460023087798
Condition 3: 24 Hour
Replicate 10.12477069145491
Replicate 20.11986553744879
Replicate 30.23790983355323


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_40886.p2 GENE.R_Transcript_40886~~R_Transcript_40886.p2 ORF type:5prime_partial len:184 (-),score=28.88,gag_pre-integrs|PF13976.2|2.7e-19,rve|PF00665.22|1.3e-06 R_Transcript_40886:1795-2346(-)
GCTCTTGTATTACTAAAGGCAATTCGATCTGGTAGTCTCTATGTGCTGCAGGGTTCAACTGTAACAGGTTCTGCAGCTGTCGCCTCATCCAGCAAAGACGACACCAAGTTGTGGCATATGAGATTGGGCCACATGAGTGAGAAGGGAATCCAAATCCTCAAGAAGAAGGGTCATCTTGGTAACCATTGTACCGGTAAGGTTGATTTCTGTGAACATTGCATCTTTGGTAAGCAGAAGAAAGTTAGCTTTTCTAAAGCTGTCCACAGAACCAAAGGTACTCTGGATTACATTCATTCGGATCTTTGGGGTCCATCGAAAGTTCCTTCTAGAGTAAAATGTCATTATATGTTGACTATAATTGATGATTTCTCACGAAAACTCTGGGTTTATTTTCTCAAGCATAAGAATGAAGCGTTTTCTACTTTTAAGGAGTGGAAAACATTGATTGAGAATCAGACTGGCAAGAAGGTAAAAAGACTGATAATGGCCTTGAGTTTTGTTCCAATGAGTTCAACAATTTCTGCAAGAAAGAAGGTATTGCCAGACACCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_40886.p2 GENE.R_Transcript_40886~~R_Transcript_40886.p2 ORF type:5prime_partial len:184 (-),score=28.88,gag_pre-integrs|PF13976.2|2.7e-19,rve|PF00665.22|1.3e-06 R_Transcript_40886:1795-2346(-)
ALVLLKAIRSGSLYVLQGSTVTGSAAVASSSKDDTKLWHMRLGHMSEKGIQILKKKGHLGNHCTGKVDFCEHCIFGKQKKVSFSKAVHRTKGTLDYIHSDLWGPSKVPSRVKCHYMLTIIDDFSRKLWVYFLKHKNEAFSTFKEWKTLIENQTGKKVKRLIMALSFVPMSSTISARKKVLPDT*

Click here to download the sequence:
Link to NCBI Protein BLAST