Transcript Information: R_Transcript_40936.p1


Annotated TAIR IDATCG01130.1
Annotated Gene NameYcf1 protein
Annotated Gene Symbol(s)YCF1.2
Annotation TypeOrtholog
Chromosome PositionchrC:123884-129244 | Reverse length=1786
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 155.492129822702
Replicate 281.466095455631
Replicate 364.708159658333
Condition 2: 8 Hour
Replicate 146.781510587479
Replicate 249.009495711908
Replicate 344.781102580344
Condition 3: 24 Hour
Replicate 138.267110922665
Replicate 243.980572495779
Replicate 343.306470869523


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_40936.p1 GENE.R_Transcript_40936~~R_Transcript_40936.p1 ORF type:complete len:1867 (+),score=-17.13,Ycf1|PF05758.8|0,Ycf1|PF05758.8|9e+02,Ycf1|PF05758.8|7.3e+03,Ycf1|PF05758.8|1.6e+04 R_Transcript_40936:296-5896(+)
ATGATTTTTCAATCTTTTCTACTGGGTAATCTAGTATTCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCAGATTATGGAAGAAGGAGAAGAAGGAACCGAGAAGAAGGTATCAGCAACAACGGGTTTTATTATGGGACAGCTCATGATGTTCATATCGATCTATTATACGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCCTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTAGCAGAAATTCAATGCGTAATCTCAGCATTCAATGTGTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGCCAGATTAGTCAACATTTATATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGGTATTAGTCTGGATACAGCAAAATCGTTCTATTAGATCTAATGTACTTATTCGATCTAATAAGTACCTTGTGTCAAAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATGCCGTCACCCATTTTTACTAAGAAACTGAAAGAAACCTCAGAAATGAAAGAAAGTGAGGAAGAAACAGATGTAGAAATAGAAAAAACTTCCGAAACGAAGGAGACTAAACAGGAAGAAGAGGGATTCACCGAAGAAGATCCTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAAAGATCCGAGTGAATGGAAAGGACAAAACAAAGGATGAATTCCACTTTCACTTAAAAGAAGCATGCTATAAAAATAGCCCAACTTCTTATTCTGGGAATCAAGATATTTCGAAGTTAGAAATACTTAAAGAAGAAAATAAAAACTTCTTCTGGTTTGAAAAACCCCTTCTTTCTCTTCTTTTCGACTATAAACGTTGGAATCGTCCAACGCGATATATAAAAAACAATCGATTTGAAAATGCGATAAGAACTGAAATGTCACAATATTTTTTTTATACATGTCAAAATGATGGAAAACAAAGAATTTCTTTTACATATCCACCCAGTTTATCAATTTTCTGGGAAATGATACAAAGAAAGATTTCTTTGTCTAAAACAGAAAAATTCTTCTATGATGAACTTTACAATTATTGGATTTATACCAATGAACAAAAAAAGAACAGCTTAAGAAACGAAATAGTAAATCGAATTGGAGTTCTAGACAAAGGACTCTTTTATATAGATATACTCGAAAAAAAAACTCGATTATGCAACGATAAAATGAAAAAGCAATATTTACCAAAAATACATGATCCTTTCTTAAATGGATTTTATCGTGGGATAATAAAAAAATTTTTATTTTCACCAGCAGTAAAAAAAAATCCGATAGATGAAATCTTGATAAATAAGATTCATAGTATCCTTCGTACTGATTATAATTACCACGAATTTGCACAGAAAATAGATACGTTTGGGAAACAAAAATTACTATCAATCGAAATTTTGCATTTCGTGAGTCAATTTGCTGGGAAATCAACGTCGAATCTACAAGGAATTTCTTTAGATCGAGAAAATTTTTTAAAATTTTTAGCTGATGCAATCATACTTGATTCTTTCACTCAAACGAGTCAAAAAAAATCTTTTGGAATAAAAGAAATCAGTAAAAAAATTCCTCGCTGGTCATACAAATTAATTGATGACATAGAACAACAAGAAAGAGAAACTGAAGAAGAGGTAATGACGGAGCCTCAAATCCGTTCAAGGAAAGCTAGGCGTGTAGTAATTTTTACTAATATTGAAGATGATCCTACTATCAAAGAGACAAATAAACGGGATGAAGCAGACGATGTGAAATTGATACGTTATTCACAACAATCAGATTTTCGTCGAGACGTGATCAAAGGTTCTATGCGTGGTCAAAGACGTAAAACAGTTATTGGAAAACTGTTTCAAGCAAATATGCATTCCCCGCTTTTTTTAGACAGAATAGATAAATTGTCTTTTTTTTCTGTTAATCTTTCCAGACTAATTAAACAAATTTTTCTAAAAAAAACGAAAAAAAAACTACAATTTCCAATTTCGGATTATACCGAAAAAGAAATAAAGGAAAAGGATAAAAAGAAAAAAAACGAATACAAAAGAGAAGAAGAAAAAAAACGAGAAAAAACCCGAATACACATAAGTGAAACCTGGGATACTCTTACATTGGCTCAAGTAATTAGGGGTTTGACGTTAGTAAGTCAGTCAATTTTTAGAAAATATATTTTATTACCTTTATTGATAATAGCAAAAAATATTGGCCGTCTATTACTGCTCCAACGTGCTGAGTGGTCGGAGGATTTTAAAGAGTGGGGTAGAGAAATGCATGTTAAATGTACTTATAACGGTGTTCAATTATCAGAAACAGAATTTCCTAAAAATTGGTTAACAGAGGGTATTCAGATAAAGATACTATTTCCTTTCCGTCTAAAACCGTGGCATAAATCTAGAATACGACCTTCTCATCGGGATCAAATGAAAAAGAAAGAACAAAAAAATAAAAACCAAAAGGATTCGTTTTGTTTTTTAACAGTTTCTGGAATGGAAACGGAACTTCCTTTTGGTTCTCCTCTAAAACGACCTTCCTTTTTTAAACCTGTTTTTAAAGAACTAAAGAAAAAAATTCAAAAATTTCGAACTAAATCTTTAATAATTCTCAAAGAAAAATTCAAATTGTTTCTAAAGGTACCAAATGAAATAACAAAATGGATTATTCAAAGCCTTCCATTTTTAAAAAAAAATAAAAACAGATTTCGAATTGGAAATCCAATTCTAGTAGTTGGATTGAGAAAAGAATCGAGTGAAATAAAAAAAGAAAAAGATTTGATAACCAATAATCAGATAATTCACGAATCATCCATTCAAGCCCAATTAAAAAATTCGACAACTTATTCAGTGACAGAAAAAAAAATGAAAGATCTAGCTAATAGAACAAGGACAATCAGAAATCAAATCGAAAAAATTAAAAAAGACAAGAAAAAGGAATTACTTACTATAGAAAGAATCCTTAATCCCACCAAAACACGTTATGGTATTAAAAAATTAGACTCATACGAAAATATTAGTCAGATATTTAAAAGAAGAAATGCTCGATTAATCCGTAAATTGAGTTATTTTCTAAAATTGTTTAGAGAAAGAATCTACGTAGATCTATTTCTATATATTGTTGATATTCCCAGAATTAATACACAACTTTTTCTTGAATCGACAAAAAAATTAATTGATAAATCCATTTACAATACTGAGACAAATCAAGAAAGGATTGATACAACAAATAAAAATAAAATTCAATTTCTTTCGACTATAAAAAAATCACTTTTCCAATTTAGTAGTAATAATTTAAGGATTCATTCTGATTTATCTTTTTTGTCCCAAGCCTATGTATTTTTTAAATTATCACAAGCCAAAATTATTAACTTATATAAGTTAAGATCTAAGTTAAGATCTGTCTTTCAATATCATGAAACGTCTTTATTTCTAAAAAAAGAAATAAAAGATTATTTTGGAACACAAGGAATAACTCATTACAAACTAAGAACTAAGAAACTTCCAAATTCCGAAATGAACCCATGGAAAAACTGGTTAAAAAGTAATTATCAAGCCGATTTATCTCAAATAAAATGGTCTCGATTAGTACCACAAAAATGGCGAAATAAAGTCAATGAACATTATAGGGTTGAAAATAGAAATTTTAAAAACAAAAAAAAGAATGAATATGAAAAAGAACAATTAATTAATTATAATTACAAAAATGCCAAAAATTCTGAAGCCCATTTATTTTTCTTAACCGATATTTGTAAAAAAAACTATAGATATGATGTTTTATCATATAAATTTATTTATTTTGAAGATAAACAGGATTCATATAGTTATGAGTTACCATTCAAAGTAAATCAAAATCACGAATTTTCTTATCCTTATAATTACAACTTAATTGATATGTGGTGGAAGATCCCTATCACTAATTATTTAGAACTAACAAATATTATAGATATAAAAAAAAATACAGATAGAAAATATTTTGATTGGAAAATTATCGATTTTTGTCTTAAAAAGAAAGTCGACATTGGAACCTGGATCGATACCAGTATTAGCTATAATAAAAATACGAAAACTGAACCTAAGAATTATCAAATTGTTGATAAAATTGATAAGAAAGGTATTTTTTCTCACACAATTTATCAAGAAATCAATCGATGCCATCAAAAAAAAAACCTTTTTCTTTTTGATTGGATGGGAATGAACGAAGAAATACTAAGTAGTCCCATATCGAATCTGGAATCGTGGTTCTTCCCCGAATTTGTCTTATTTTATAATGCATATAAAATGAAACCGTGGGTTATACCAATTAATTTCCTTTTTTCAAATTTGAATATACGTATAAGTGAAAATTTTAGTGAAAATAAAAACATCAATAGAAAGAAAAAAAAGAATCCTTTTCTACCATTTCTACCATCAAATAAAAAAAAATCTCTTGAATTAGAGAATCGAAATCAAAACAAAAACGAACTCGTGGATCAAGCAGATTTTGGATTCGATATCCAAGAGAACTCTGAATTTGTTTTCTCAAACCAACAAAACGATTCAGATTCATATATGGAAAAAGGTAGAAATAAAAAACAAGACAAGAATAGTACAGAAACAGAACTCAATCTCTTACTGAAAAGGTATTTGCTTTTTCAATTGAGATGGGATGAGTCTTTGAATGAAAAATTGATGAATAATATCAAAGTCTATTGTCTCCTGCTTAGATTGATAAATCCAAGAGAAATTACTATATCCTCTATTGTAAGGAGAGAAATAAATCCGGAAATAATGCTGACTAAGAAAGATTTTTCTTATACAGAATTGCTGAAAAGGGGGATATTTTTTATTGAACCAGTTCGTCTGTCTGTAAAGGATGATGGACAATTTATTCTGTATCAAACCATAAGTATTTCATTGGTTCACAAGAGTAAACACCAAAAAAATCAAAAAACATACAATGAAAATGTTACTAAGAAGAATTTGGATCAATTGGTTTCACGACATCAAAAGATGACGAAAAAGCGAGACAAAAACAATTATGATTTGCGTGCTCTTGAAAATATTTTATCGCCTAGACGTCGTAGAGAATTAAGAATTCTAATTTGTTTCAATTCAAGGAATAATAATGGTATGGATAAAAACCCAATATGTTGCAATGACAATCGGGTAAAAAACTGTCGTCAATTTTTTGATGAAAGAAAAGATCTTGATCGAGATAAAAATCGACTTATAAAAATGAAATTCTTTCTTTGGCCCAATTATCGATTAGAAGATTTAGCTTGTATGAATCGTTATTGGTTTGATACTAATAATGGCAGCCATTTTAGTATATTAAGAATACGTATGTATCCACGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_40936.p1 GENE.R_Transcript_40936~~R_Transcript_40936.p1 ORF type:complete len:1867 (+),score=-17.13,Ycf1|PF05758.8|0,Ycf1|PF05758.8|9e+02,Ycf1|PF05758.8|7.3e+03,Ycf1|PF05758.8|1.6e+04 R_Transcript_40936:296-5896(+)
MIFQSFLLGNLVFLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRAQIMEEGEEGTEKKVSATTGFIMGQLMMFISIYYTPLHLALGRPHTITVLALPYLLFHFFWNNHKHFFDYGSTSRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGHILFMKWVGLVLVWIQQNRSIRSNVLIRSNKYLVSKLRNSMARIFSILLFITCVYYLGRMPSPIFTKKLKETSEMKESEEETDVEIEKTSETKETKQEEEGFTEEDPSPSLFSEEKEDPDKIDETEKIRVNGKDKTKDEFHFHLKEACYKNSPTSYSGNQDISKLEILKEENKNFFWFEKPLLSLLFDYKRWNRPTRYIKNNRFENAIRTEMSQYFFYTCQNDGKQRISFTYPPSLSIFWEMIQRKISLSKTEKFFYDELYNYWIYTNEQKKNSLRNEIVNRIGVLDKGLFYIDILEKKTRLCNDKMKKQYLPKIHDPFLNGFYRGIIKKFLFSPAVKKNPIDEILINKIHSILRTDYNYHEFAQKIDTFGKQKLLSIEILHFVSQFAGKSTSNLQGISLDRENFLKFLADAIILDSFTQTSQKKSFGIKEISKKIPRWSYKLIDDIEQQERETEEEVMTEPQIRSRKARRVVIFTNIEDDPTIKETNKRDEADDVKLIRYSQQSDFRRDVIKGSMRGQRRKTVIGKLFQANMHSPLFLDRIDKLSFFSVNLSRLIKQIFLKKTKKKLQFPISDYTEKEIKEKDKKKKNEYKREEEKKREKTRIHISETWDTLTLAQVIRGLTLVSQSIFRKYILLPLLIIAKNIGRLLLLQRAEWSEDFKEWGREMHVKCTYNGVQLSETEFPKNWLTEGIQIKILFPFRLKPWHKSRIRPSHRDQMKKKEQKNKNQKDSFCFLTVSGMETELPFGSPLKRPSFFKPVFKELKKKIQKFRTKSLIILKEKFKLFLKVPNEITKWIIQSLPFLKKNKNRFRIGNPILVVGLRKESSEIKKEKDLITNNQIIHESSIQAQLKNSTTYSVTEKKMKDLANRTRTIRNQIEKIKKDKKKELLTIERILNPTKTRYGIKKLDSYENISQIFKRRNARLIRKLSYFLKLFRERIYVDLFLYIVDIPRINTQLFLESTKKLIDKSIYNTETNQERIDTTNKNKIQFLSTIKKSLFQFSSNNLRIHSDLSFLSQAYVFFKLSQAKIINLYKLRSKLRSVFQYHETSLFLKKEIKDYFGTQGITHYKLRTKKLPNSEMNPWKNWLKSNYQADLSQIKWSRLVPQKWRNKVNEHYRVENRNFKNKKKNEYEKEQLINYNYKNAKNSEAHLFFLTDICKKNYRYDVLSYKFIYFEDKQDSYSYELPFKVNQNHEFSYPYNYNLIDMWWKIPITNYLELTNIIDIKKNTDRKYFDWKIIDFCLKKKVDIGTWIDTSISYNKNTKTEPKNYQIVDKIDKKGIFSHTIYQEINRCHQKKNLFLFDWMGMNEEILSSPISNLESWFFPEFVLFYNAYKMKPWVIPINFLFSNLNIRISENFSENKNINRKKKKNPFLPFLPSNKKKSLELENRNQNKNELVDQADFGFDIQENSEFVFSNQQNDSDSYMEKGRNKKQDKNSTETELNLLLKRYLLFQLRWDESLNEKLMNNIKVYCLLLRLINPREITISSIVRREINPEIMLTKKDFSYTELLKRGIFFIEPVRLSVKDDGQFILYQTISISLVHKSKHQKNQKTYNENVTKKNLDQLVSRHQKMTKKRDKNNYDLRALENILSPRRRRELRILICFNSRNNNGMDKNPICCNDNRVKNCRQFFDERKDLDRDKNRLIKMKFFLWPNYRLEDLACMNRYWFDTNNGSHFSILRIRMYPR*

Click here to download the sequence:
Link to NCBI Protein BLAST