Transcript Information: R_Transcript_40947.p1


Annotated TAIR IDAT5G25520.2
Annotated Gene NameSPOC domain / Transcription elongation factor S-II protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8885550-8889484 | Forward length=997
E-Value2.6E-163
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.03291705711
Replicate 29.9035474572696
Replicate 311.081160898417
Condition 2: 8 Hour
Replicate 112.527123106715
Replicate 217.23262017473
Replicate 319.466211946655
Condition 3: 24 Hour
Replicate 115.113356847207
Replicate 212.164181783661
Replicate 316.441182072145


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_40947.p1 GENE.R_Transcript_40947~~R_Transcript_40947.p1 ORF type:complete len:1077 (+),score=239.19,TFIIS_M|PF07500.10|2.4e+02,TFIIS_M|PF07500.10|8.3e-27,SPOC|PF07744.9|3.2e-12 R_Transcript_40947:295-3525(+)
ATGTCAAACACTCTTGTCTCACAGCAGCTTGCATTGCCGACATTGCAAGAAAGTCAATCGGGACTGAGTGATTCAGTTATCAGTGGATTAGATTCGCCCATGCAAAATTTTTCTGAAGGATCGACGGAACCCTTTAGCAGCATCCCTTTAACATTACCTTTATCAAACATGCAAGGGGACTATTGTATGTTTGGTACACCTGAAGCACAGGACACATTGATATCATGTAATGTGAATGGGCATTCTGACTCCCGTTCAAATTATGTGGAGATGCAGCAGTTTGCTTTACCTAGCCGGGAAACAGGTGAAGCACAAATTGTGCAGCCTGGATTGGCACAGTTGAAAGTGTCATTGCCAACCAAACGAAAGGCAGCTAGTGAGCGTAGTCCTGATAACCAAGGTCCACGAAATATGCTTGTGCCTAACCGGAAAGTGGCACAGGTGGGTTCCTTCCCAAAGGCACCTAGTACTACAAGTGCATGTATTCCAAACTCACCTAGGCTAACTGCCTCCGGCAGGAAGGTGGTGCAAGTTGAATCAGTCATGATTAAATCTCACTCTACTACTTCAAAGAAAAATGCACAGCCACAAGTGTCTCCAAAAACCCAGACAGGGGCTGATGAATCTGTGAGGGCCAAGCTGAGGGAATCATTAGCTTCTGCACTGGCCTTGGTTTCCAGACAGGAAAAATGTTCCCCAGATCAGAAGGTCATGATGGAAACTGAGTCCACAGCAGTTTCTCAGAAGGGTGTTGGGGAGCATAAACCTTTGGTTTCAGGGTCGAGCAATGAAACTCCTAACCAGGAATCTCAAAAGGATGGAGAAACCTGTACTTCCAGCATTCCACATCAAGCAGATGGGAGTAATAATGTTCAAGACAGACAGCAAACGAATAAAGTTTGCGAAAAGGCCACCGAGACATGGAACTATATGGAGCCAGACTTCCAGTATAATCCTGTTTTGTGTGGGGAAGATGATTCCTTTAAGGACGGATTTACTTTTAAAGATGACCTCTTGCAGGGAAATGGGCTTTCGTGGGAATCAGATCTTTATCCAGAAATTCCAGAAATGAAGCAAGTTGAAGATACTGGAAAACCTGAACTGGTGCATGAGGGTGTGTCTCATGATGAAAAGGAGCAAACAATTCAGTCTCCAGAATTAGTTGCCTCTCAAATTGAATCAGAGCTTTTTAAATTATTTGGTGGTGTGAATAAAAAATATAAAGAGAAGGGAAGATCTCTTTTGTTTAACTTGAAAGATCGTAATAATCCTGAGCTAAGAGAAAGAGTCATGTCTGGTGGGATACCTCCTGACCGTCTGTGTTCAATGACTGCTGAGGAGCTTGCTTCAAAGGAGCTTTCACAATGGCGAATTGCGAAAGCAGAAGAGCTTGATCAAATGAAAGTTCTTCCTGATTCAGAACTTAATATGAGACGTTTGGTTAAGAAAACTCACAAAGGTGAATACACCGTGGACTTGGAGCCGGATATTGGTACTTCGGAGGATATCCCACTAGGTACAAGTGTGACACATGAAAAGCGACCAAAGGTCAATGCTGCTGCTGCAGCACCTTCTCTTAAAGCTGAGAAAACTAAGGCAGCTCAGGATAATTGTGAAATTTCTATTCCTAGTGATGGTGCTGATATGCAAGGGCTAATGGTGGACGATATGAGAGATCTTCCTCCCATTGTCTCATTGGATGAATTCATGGAGTCCCTTGATAAAGAGCCACCCTTTGAGAATCTACCAGATAATTTTGAGAAAAGAACCCCCGAGTCTGATAAGGAACATCCAGAGTTGGGCTCTGAATCTAAGTCACCTGTACAACCTTCAAAGGTTTCTATGGAGGTAATATCACAGAAAATCAATGAAGTGGCAGAAGGCACAAAGCCTGGTGGTGATGTTAAATCAGCTGAAAGTCAGCAGGGATTGGATACCCAAACAAAGCATGGTGGCGATGTTAAATCAGATGAAAGTCAGAAGAGATTGAATACCCAAATTATTCGTCTTCCAAAGGGTGAACGGGTTTGGGAAGGATTACTTCAGCTTAATATTTCTTCCACAGCCAGTTTTGTAGCTTTCTATAAAAGTGGTGAAAAAACTAGTACCAGGGAGTGGCCAATCTTTGTTGAGATCAAGGGTCGTGTCAAGCTTGACGCTTTTGATAAGTTTGTTCAGGCACTTCCCATGTCCCGGACCCGTGCAGTGATGACATCCCATTTTGTATTGAAGGAAGAATCTACAGATACTGACCGTGCCAATCTCACTGAGATGGTTGAATCTTACATTGTGGATCAGAGGGTGGGGTTTGCTGAACCTGCCCCTGGAGTGGAGTTATATCTTTGTCCACCCCGCGTAAGAGCATTAGATGTGGTTATCAATCATCTTCCTAAGAGCTACACTGAGAAACTAAACGATATTGATAATGGCTTAATTGGAATTATTGTATGGAGAAAAGCGCAAATTACACCGTCTGCAATTTCGCCCAACTCCTCATCACATCATAAAGACGTGACTAATAAGCACCCTTTTGCAACTGGGAGCAAAAATGCTGAACATAATATGAACGGGAATGTTGGTTTTGCCTCTAGACCTGCCCCCCCTCCCCATGTTCTCTCAAAACCGCAACCTGGTGATGTCGAAGATGATAATGATGATGTCCCTCCTGGATTTGGGCCCCCGGTTCCCCGGGATGATGATGACCTGCCGGAATTCAACTTTTCCAGTGGTTCAAACGCACCCATATCACGTATTCCTGACCCAAAGCCCCACCTGGGTCAGGGGATGCGTTCGGGTTCTTGTCATCCTCATGCTTCATCCCGGCAGGTTGAGCAAATGAGAGAACTGGTCCTGAAATATGGGCAAAATGAAACCAAATCTGGTAGTGGAATCCCTGCACAACTGTGGCATGATGACGACGATGATGATATACCCGAATGGGAGCCTCAGGCCTCTCACAACGAGCCGCCACCTCAACTACCGCTGCCCCCTCACAATCCTGTTTTGCCGCCGCAACACAATCAACCTCCATTCCATCGCCCTCCGTGGCCACCACTGTCACAGCCTTTGCAGCCACTTCAACCACCAATGAGCATCCAGCAGCAAGCAATTTGGCGGTCTTACGGCCCTAATAGTGTAACCATTCAACCTTCTGGGCAGTTCTATCCGGCCACTGGCCACCGAGGGAGGGATTGGAGATCAAATGCTCCGAACAGCTATAGGGGTTATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_40947.p1 GENE.R_Transcript_40947~~R_Transcript_40947.p1 ORF type:complete len:1077 (+),score=239.19,TFIIS_M|PF07500.10|2.4e+02,TFIIS_M|PF07500.10|8.3e-27,SPOC|PF07744.9|3.2e-12 R_Transcript_40947:295-3525(+)
MSNTLVSQQLALPTLQESQSGLSDSVISGLDSPMQNFSEGSTEPFSSIPLTLPLSNMQGDYCMFGTPEAQDTLISCNVNGHSDSRSNYVEMQQFALPSRETGEAQIVQPGLAQLKVSLPTKRKAASERSPDNQGPRNMLVPNRKVAQVGSFPKAPSTTSACIPNSPRLTASGRKVVQVESVMIKSHSTTSKKNAQPQVSPKTQTGADESVRAKLRESLASALALVSRQEKCSPDQKVMMETESTAVSQKGVGEHKPLVSGSSNETPNQESQKDGETCTSSIPHQADGSNNVQDRQQTNKVCEKATETWNYMEPDFQYNPVLCGEDDSFKDGFTFKDDLLQGNGLSWESDLYPEIPEMKQVEDTGKPELVHEGVSHDEKEQTIQSPELVASQIESELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGGIPPDRLCSMTAEELASKELSQWRIAKAEELDQMKVLPDSELNMRRLVKKTHKGEYTVDLEPDIGTSEDIPLGTSVTHEKRPKVNAAAAAPSLKAEKTKAAQDNCEISIPSDGADMQGLMVDDMRDLPPIVSLDEFMESLDKEPPFENLPDNFEKRTPESDKEHPELGSESKSPVQPSKVSMEVISQKINEVAEGTKPGGDVKSAESQQGLDTQTKHGGDVKSDESQKRLNTQIIRLPKGERVWEGLLQLNISSTASFVAFYKSGEKTSTREWPIFVEIKGRVKLDAFDKFVQALPMSRTRAVMTSHFVLKEESTDTDRANLTEMVESYIVDQRVGFAEPAPGVELYLCPPRVRALDVVINHLPKSYTEKLNDIDNGLIGIIVWRKAQITPSAISPNSSSHHKDVTNKHPFATGSKNAEHNMNGNVGFASRPAPPPHVLSKPQPGDVEDDNDDVPPGFGPPVPRDDDDLPEFNFSSGSNAPISRIPDPKPHLGQGMRSGSCHPHASSRQVEQMRELVLKYGQNETKSGSGIPAQLWHDDDDDDIPEWEPQASHNEPPPQLPLPPHNPVLPPQHNQPPFHRPPWPPLSQPLQPLQPPMSIQQQAIWRSYGPNSVTIQPSGQFYPATGHRGRDWRSNAPNSYRGY*

Click here to download the sequence:
Link to NCBI Protein BLAST