Transcript Information: R_Transcript_411361.p1


Annotated TAIR IDAT5G11170.1
Annotated Gene NameDEAD/DEAH box RNA helicase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3553334-3556646 | Forward length=427
E-Value2.8E-181
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.45746769310072
Replicate 20.57884537488541
Replicate 30.28705184957585
Condition 2: 8 Hour
Replicate 10
Replicate 20.11208462075782
Replicate 30.09098551689417
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_411361.p1 GENE.R_Transcript_411361~~R_Transcript_411361.p1 ORF type:5prime_partial len:399 (+),score=75.38,DEAD|PF00270.25|1.8e-39,Helicase_C|PF00271.27|0.068,Helicase_C|PF00271.27|1.2e-26,ResIII|PF04851.11|2e-07,ResIII|PF04851.11|6.5e+03,CMS1|PF14617.2|2.3e-05,CMS1|PF14617.2|1.2e+03 R_Transcript_411361:2-1198(+)
GACATTAAGGATGGAGACCATCGTTCTGTCCACAATGCTGCATTCAAAGATTTCCTCTTGAAGGCCGAACTCATCAGAGCTTTGACTGATTGCGGTTTCGAATTGCCATCTACAGTCCAACACGAGTGCATTCCTCAGGCAATTTTGGGAACTGATATCTTGTGCCAAGCTAAATCTGGTATGGGAAAGACTGCAGTCTTTGTTTTGGCAACCTTGCAACAAATTGACAGCAACATCTCTGACAACAACGTCGATACCTTGATTCTCTGCCACACCAGAGAGCTTGCATTCCAAATCTTCCACGAATTCAACAGATTCAAGAAGTACCTCCCAACCATCAGAGTTGAATGCATCTATGGAGGTATCCCAATCGAAAAGAATCGCGAGGTCTTGAAAAACGAGAAAACCAGCCCACACATCTTGATTGGAACACCAGGAAGAATTTTGGCTCTTGCCAAGGAAGGATCTTTGAAATTGGATAACCTCAAGAGATTCATCTTGGATGAGTGCGATCAATTGCTTGAGAAATTGGACATGCGTAAGGATATCCAAGACATCTTCCGTTCCACTCCTCACGAGAAGCAAGTCATGATGTTCTCTGCAACCCTTTCCAAGGAGATCAGACCTATCTGCAAAAAGTTTATGCACAATCCTTTGGAGATCTTCATCAACGATGATCTTTTGTTCTTGGACGGCCTCCAACAATACTACACCAACTTGGAAGAGAACAAGAAGAACCGCAAGCTCGTCGACTTGTTGGACTCCCTCAACTTCAATCAGTTGGTCATCTTTGTCAAGAGCAGAGAGAGAGCTAAAGAGTTGAACAGAATCCTCTTGAAGAACAACTTCCCTTCTGCTTGCATCTATGGAGAGCCAATGAAGCAAGAGGAGAGAATTGAGAGATACAGACAATTCAAGAACTTTGAGATCCGTATCATGGTTGCTACTGATCTCTTTGGTCGTGGTGTCGATATCGAAAAGGTCAACGTTGTCATCAACTACGATATGCCTGATAATGCTGATACCTACCTCCATCGTGTTGGTAGAGCTGGTCGTTTCGGTACCAAGGGTCTTGCCATCTCCTTTGTCACCACCGAGGAGAACAACAAGATCCTCCAAGAGGTCCAAGATCGCTTCGTCGTCAAGGTCCCAACTCTCCCTCCAACCATTGACTCTTCCACCTACATGCCAAACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_411361.p1 GENE.R_Transcript_411361~~R_Transcript_411361.p1 ORF type:5prime_partial len:399 (+),score=75.38,DEAD|PF00270.25|1.8e-39,Helicase_C|PF00271.27|0.068,Helicase_C|PF00271.27|1.2e-26,ResIII|PF04851.11|2e-07,ResIII|PF04851.11|6.5e+03,CMS1|PF14617.2|2.3e-05,CMS1|PF14617.2|1.2e+03 R_Transcript_411361:2-1198(+)
DIKDGDHRSVHNAAFKDFLLKAELIRALTDCGFELPSTVQHECIPQAILGTDILCQAKSGMGKTAVFVLATLQQIDSNISDNNVDTLILCHTRELAFQIFHEFNRFKKYLPTIRVECIYGGIPIEKNREVLKNEKTSPHILIGTPGRILALAKEGSLKLDNLKRFILDECDQLLEKLDMRKDIQDIFRSTPHEKQVMMFSATLSKEIRPICKKFMHNPLEIFINDDLLFLDGLQQYYTNLEENKKNRKLVDLLDSLNFNQLVIFVKSRERAKELNRILLKNNFPSACIYGEPMKQEERIERYRQFKNFEIRIMVATDLFGRGVDIEKVNVVINYDMPDNADTYLHRVGRAGRFGTKGLAISFVTTEENNKILQEVQDRFVVKVPTLPPTIDSSTYMPN*

Click here to download the sequence:
Link to NCBI Protein BLAST