Transcript Information: R_Transcript_41436.p1


Annotated TAIR IDAT3G11960.1
Annotated Gene NameCleavage and polyadenylation specificity factor (CPSF) A subunit protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:3786431-3793160 | Forward length=1379
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.5442876476873
Replicate 22.5616743771382
Replicate 34.4750437968531
Condition 2: 8 Hour
Replicate 14.3070196576367
Replicate 25.1885279721314
Replicate 37.8122575649121
Condition 3: 24 Hour
Replicate 17.5094025138523
Replicate 25.0185619032451
Replicate 36.6678860835084


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_41436.p1 GENE.R_Transcript_41436~~R_Transcript_41436.p1 ORF type:5prime_partial len:1336 (+),score=272.95,MMS1_N|PF10433.5|1e-105,CPSF_A|PF03178.11|2,CPSF_A|PF03178.11|1.8e-29 R_Transcript_41436:3-4010(+)
GGTATTGTTCAGTCTGTCTGTGAGCAGCCAGTGTTTGGCATGATAAAAGACCTGGCTGTTTTGCCCTGGAATGAGAAGTTCCAGACACGAAATATACAGATGCGGGGGAAAGACCTGTTGCTCGTTACTTCTGATTCTGGAAAGCTTTCATTCCTCACATTTTGCAATGAAATGCACAGGTTCTTTCCAGTGACTCATGTGCAACTCTCTGACCCTGGAAATTCAAGGCATCAGATTGGCAGACAACTTGCTGTTGATCGCAGTGGCTGTTATATTGCTGTTAGTGCGTACGAAGAGCGTCTGGCTCTGTTCTCTGTTTCAGCATCTAGCGACATTGATATGATTGATAAGCGAATAACATATTCTCCTGAACCTGAAGATGACTTGATTAGCAGAGAAATCCAGAAGACAAGAAAATCTATTTTACTTAGCTCCCACCCAACAGAGTCAGTTGCTGCAGACTCTGGTTCCATTCCGCCAATCCCGCCTTATATAAATGGTACTATATGGAGTATGTGTTTTATTTCGAAGGATCCATTGCAATCAATTAAGGAGTACAATCCTGTACTAGCTGTTGTTGTAAATAGGAGACGGTCATCCCTGAATGAGCTGTTGCTGTTGGGATGGGATGTAAGAGAGAATACTGTTCATGTTCTTTCTCAGTTTGTTGAGGGAGGGTCTTTGGCACATACAGTTACTGAAGTTCCTGGATCTGGGGGACTTGCATTGTTATTTAGGATGGGGGATATTTTGCTTATGGATCTTAGGGATGCTTGTAATCCTGTTTGTGTGCAAAAAACAGTTCTCACTTCCTCAATTTCTATGATCGAGGAGCAGAATTGTATGGAAGAACCTTTCAGAATACATGACGGTGATGATGAGGGTTTCATTGCTGCCCGTGCTCTTCTAGAGCTGCAAGACTATGGTATGGATATTAGTAAAGGTGATGATCCAATGAGCATTGACAATGATACAGGGAACGGGAAATCTGTACCCAAATATGTCTGCTCATGGAGTTGGGAACCAGATGGTCCTGGGATCAAAGCAAATCCAAGGATGATGTTTTCTGTGGATACAGGGGAAGTTTTCTTGATTGAAATTACTGTTGAGCCTGATGGCCATAGTATCAGTTTGTCTGATTTTCTTTATCACGGTCTACCCTGCAAAGCGCTTTTATGGACTGAAGGTGGGTTCTTGGCAGCAATTGTGGAGATGGGTGATGGAATTGTCCTAAAACTACAAGATGGGAGGCTAGAGTATTCAAGTCCAATTCAAAATATTGCTCCAATCTTGGACATGTCAGTTATGGACTACCACAATGAAAAGCATGATCAGATGTTTGCTTGCTGTGGAACAGCTCCTGAAGGGTCACTGAGAATTATTAGAAGTGGCATCAGTGTGGAAAGATTATTGAGAACAGCTCCCATATATCAAGGCATAACTGCAACATGGACTGTTAGGATGAGGTTAAATGATACGTACCATTCTTTTCTTGTGCTTTCTTTTGTTGAAGAAACTAGAGTGTTGTCTGTTGGTGTAAGCTTTACAGATGTGACCGATTCAGTTGGTTTTCAGCCTGACGTTTGTACTTTGGCCTGTGGTCTTGTTGATGATGGTTTGTTGGTTCAAATCCATCAAAATTCAGTTAGACTTTGCTTACCTACTGCAGTTGCTCATCCTGAGGGTATTCCAATGTCTTTTCCAGCATGCACTTCCTGGTCTCCTGATAATATTGGCATCAACCTGGGCGCAGTTGGACATAATTTTATTGTTGTGGCTACCTCAAATCCTTGCTTCCTTATAATTCTTGGTGTGAAATATGTGTCTTTACATCACTATGAAGTATATGAGATGCAACATATTAAACTTCAGAGTGAGTTGTCATGCATATCTATACCTCAAAAACACATTACAAGGAAAGAATCTGTTAATTTACCAGCTGGAGTTGATATTGGTCGTACATTTGTAATTGGGACACATAAGCCATCTGTAGAAATTCTATCTTATACACATGATCAAGGCATAAGAGTTCTTGCTACTGGTATCATCTCACTAACAAGTACAACAGGAACTGCTATAAGTGGTTGTGTCCCTCAGGATGTAAGGCTTGTACTTGTTGATAGGTTATATGTTCTCTCTGGGTTGAGAAATGGAATGCTACTACGCTTTGAGTGGCCTACTATATCCTGGGGATCTGAATTACCTAGTCATAGGACCTCCATATTTGCAAAATCTGGTTTGTTAAGGACATCAGCTGCAGCTGGTATTGATCCTCAACTAAGTGGAGTCGATGTTTATGAGAAGCCAAAGGACAATGATTCCGTTCACCTCCAGTTAATTGCTGTTCGTCGGATTGGTATCACTCCTGTATTCCTAGTTCCACTGAATGATTCATTGGATGCAGATATTATTGCTCTTAGTGACAGACCTTGGTTGGTCCAAGCTGCAAGGCACAGTCTCTCATACATCTCGATATCATTTCAAACTTCAATATGTGTGACACCTGTTTCTTCAGCTGAATGCCCAAGGGGACTTTTATTTGTCGCAGAGAACAGTCTGCATCTGGTAGAGATGGTGCATAGCAAGAGGCTTAATGTGCAGAAGTTTCATCTAGGTGGAACTCCACGGAAGGTTCTGTATCACAATGAGAGTCGCTTGTTGCTGGTTTTGAGGACTGATTTGGGTAACGAGTCAAATTTATCTGATATTTGTTGTGTGGATCCCCTCACCGGTTCAGTGATATCATCATTTAAATTTGACCTGGGAGAAACTGGAAAAAGCATGGAGTTGGTGAGGGCTGGCAATAATCATGTACTGGCAGTTGGAACAAGTTTATCTGCTGGGCCTGTCATAATGCCTAGTGGAGAAGCTGAAAGTACAAAGGGCCGTTTTATCGTGCTATGCCTTGAGCACTCACCAAGTTCAGATAGTGGGTCGATGACGATATGCTCAAAGGATGGTTCCTCGTCTCAACGAGCTGCACAATTTGGTGAAGCTCCTGGATATTCTGCTGAACAGATGTCCAATAGTAGTCTCTGCAGCAGCCCAGATGATAGCTGCGATGGATTAAAACTTGACGATACTGAAGCTTGGCAGCTGCGATTGGCTTTCTCAGCTACTTGGCCTGGAGTAGTGCTTGCAATCTGTCCCTACCTTGATCAGTACTTCCTAGTTTCTTCTGGCAATGCCTTCTATTTATGTGGCTTTACAAATGGTAATCCTCAATGGGTAAGAAGGTTTGCTGTTGAAAGAACGCGATTTATGATAGTTTCGTTGACAGCATACTTTACAAGAATTGCTGTTGGTGATTGCCGTGATGGTGTACTTTTCTATTCTTATCATGAGGATGTCAGAAAATTGGAGCAGATGTATAGCGATCCTGGTCAGAGGTTAGTTGCTGATTGCTTACTCACTGATACAGAGACTGCCATTGTCTCAGATCGTAAGGGAAGCATTGCTGTCCTGACTTGTTCAACTGATTGGGAAGATAATGTGAATCCTGAATGCAACCTGTCACTTTGCTGTACGTATTACATGGGCGAGATTGCTATGAGCATCAGAAAGGGGTCATTCTCATACAAACTTCCTGTAGAGGACGCGTTTAAAGCTTGTGATGGTGGTAGTAATGTAATTGATATGTCGCACAGTGCCATCATGGCTGGGACGCTACTTGGAAGCATAGTGATTTTCATGCCTATAGCAAGAGAGGAGTATGAGCTCTTGAAAACTGTACAAGCCAGATTAGCAGTTCATCCTCTAACTGCTCCTATACTTGGAAATGATCATAGTGAATTTCGTAGTCGTGAAAATCAGGTGGCAGTCCCCACCATACTCGATGGAGATATGTTAGCTCAGTTTCTGGATCTTACAAGCATCCAACAAGAAGCCGTATTGGCACTGCCTTGTGCTACTGCTGAAGTGTCATCAAGTTTCCGATCACCTCATTCACATATATCTGTCAACCAGGTGGTGCAACTCCTTGAAAGAATTCACTATGCACTGAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_41436.p1 GENE.R_Transcript_41436~~R_Transcript_41436.p1 ORF type:5prime_partial len:1336 (+),score=272.95,MMS1_N|PF10433.5|1e-105,CPSF_A|PF03178.11|2,CPSF_A|PF03178.11|1.8e-29 R_Transcript_41436:3-4010(+)
GIVQSVCEQPVFGMIKDLAVLPWNEKFQTRNIQMRGKDLLLVTSDSGKLSFLTFCNEMHRFFPVTHVQLSDPGNSRHQIGRQLAVDRSGCYIAVSAYEERLALFSVSASSDIDMIDKRITYSPEPEDDLISREIQKTRKSILLSSHPTESVAADSGSIPPIPPYINGTIWSMCFISKDPLQSIKEYNPVLAVVVNRRRSSLNELLLLGWDVRENTVHVLSQFVEGGSLAHTVTEVPGSGGLALLFRMGDILLMDLRDACNPVCVQKTVLTSSISMIEEQNCMEEPFRIHDGDDEGFIAARALLELQDYGMDISKGDDPMSIDNDTGNGKSVPKYVCSWSWEPDGPGIKANPRMMFSVDTGEVFLIEITVEPDGHSISLSDFLYHGLPCKALLWTEGGFLAAIVEMGDGIVLKLQDGRLEYSSPIQNIAPILDMSVMDYHNEKHDQMFACCGTAPEGSLRIIRSGISVERLLRTAPIYQGITATWTVRMRLNDTYHSFLVLSFVEETRVLSVGVSFTDVTDSVGFQPDVCTLACGLVDDGLLVQIHQNSVRLCLPTAVAHPEGIPMSFPACTSWSPDNIGINLGAVGHNFIVVATSNPCFLIILGVKYVSLHHYEVYEMQHIKLQSELSCISIPQKHITRKESVNLPAGVDIGRTFVIGTHKPSVEILSYTHDQGIRVLATGIISLTSTTGTAISGCVPQDVRLVLVDRLYVLSGLRNGMLLRFEWPTISWGSELPSHRTSIFAKSGLLRTSAAAGIDPQLSGVDVYEKPKDNDSVHLQLIAVRRIGITPVFLVPLNDSLDADIIALSDRPWLVQAARHSLSYISISFQTSICVTPVSSAECPRGLLFVAENSLHLVEMVHSKRLNVQKFHLGGTPRKVLYHNESRLLLVLRTDLGNESNLSDICCVDPLTGSVISSFKFDLGETGKSMELVRAGNNHVLAVGTSLSAGPVIMPSGEAESTKGRFIVLCLEHSPSSDSGSMTICSKDGSSSQRAAQFGEAPGYSAEQMSNSSLCSSPDDSCDGLKLDDTEAWQLRLAFSATWPGVVLAICPYLDQYFLVSSGNAFYLCGFTNGNPQWVRRFAVERTRFMIVSLTAYFTRIAVGDCRDGVLFYSYHEDVRKLEQMYSDPGQRLVADCLLTDTETAIVSDRKGSIAVLTCSTDWEDNVNPECNLSLCCTYYMGEIAMSIRKGSFSYKLPVEDAFKACDGGSNVIDMSHSAIMAGTLLGSIVIFMPIAREEYELLKTVQARLAVHPLTAPILGNDHSEFRSRENQVAVPTILDGDMLAQFLDLTSIQQEAVLALPCATAEVSSSFRSPHSHISVNQVVQLLERIHYALN*

Click here to download the sequence:
Link to NCBI Protein BLAST