Transcript Information: R_Transcript_415560.p1


Annotated TAIR ID
Annotated Gene Name
Annotated Gene Symbol(s)
Annotation Type
Chromosome Position
E-Value
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.582507160795
Replicate 212.751679833982
Replicate 310.961653488421
Condition 2: 8 Hour
Replicate 18.4610842226083
Replicate 211.356049940288
Replicate 39.4464402914475
Condition 3: 24 Hour
Replicate 19.928350141405
Replicate 28.9837651397221
Replicate 311.61996468718


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_415560.p1 GENE.R_Transcript_415560~~R_Transcript_415560.p1 ORF type:3prime_partial len:955 (+),score=128.08,Retrotrans_gag|PF03732.13|4.5e-17,gag-asp_proteas|PF13975.2|3.8e+03,gag-asp_proteas|PF13975.2|5.9e-09,Asp_protease_2|PF13650.2|8.5e-06 R_Transcript_415560:29-2890(+)
ATGATCACAAGAAGCCAAGGGCAACAAGATCTTATTCCCTTGAATCTTGAGATTGAAGCTGAAGCCCGGCGACTTAGCTCTAGCCAAAGGAGACGAAGAAGGAGACAGGTAGCGCAACAACAAACTATGGCCGACCAACCTATGAGGAATTACGGCGTCCCTAGTCTTACTTCAACAGGGAACGCTATATCTCGGCAAACTACTGAGAATCACACCTTTGAATTGAAACCAGCTCTTATTAATCTTATCAAAGATGATCGATTCTCCGGCCTGCCTCATGAAATGCCTTTGGATCATCTAAACACTTTCGTTGAAAAATGTGATACCATCAAAATAAATGGAATCACTGATGATATGATCCGGTTAAAGTTATTCCCTTTCTCTCTCATGGGGAATGCGAGGACTTGGTTGCAAAACAAGCCCCCGAACACCTATGCTGATTGGGAATCGCTGGCCAAGGCATTCCTTGAGAAGTTTTACCCTCCCACGAAGACCGAGAGGTATCGTGAGGAAATTCTGCAATTCCGCCAACAACCGACCGAGACCTTGAGTGAGGCTTGGGAAAGATTTAAGGAGCTCCTACGAAAATGCCCCCATCATGGACTACCAGATTTCCTTATCCTTTCCAGCTTCACCAAACATCTTAGCGCGGATGACAAGAGGGCACTGGACTCGGCATCAAACGGATCATTTATGGGGAAAACTTATGCTCAAGGCAAAGCACTCATAGAAGAGCTAGCAACAAGCTCATTTTCTTGGAGCGAGAGGAACACTCCCCCTCCTAAGGGAGGAGGTAACATTGATTTAGATTCTATTCAAATACTTGCTGAAAAGTTAGATTCTTTAACTTTGAAAGTCGAAAGACTACAATCTATTTCAACCCCCTCACAAGAAAGTGTGAAAATGTTGCGTAATGTACAATCATATGGACATGCCAATCCCTCTTCCCCATTTGATCCCAATATTTCTCAAGTTAATGCTGTACAAAATGCCCCCATGATGACCCCCTTGTGTGAAATATGTGGTATTTATGGTCATTTTCCTGCTGAATGTAATCTTGTTGTTAGTGAGAATGTGAATGCTGTTACTCAATACCAAGGTAGACCCCAAGGGAACCCCTACCCCAACTCTTTCAACACACAATACAGAGGGAATCCCCAAGGGTACAACTACCAATCACAACAACAACAATACCATCGACCCCCACCATACTCTCAACAACCCACATATTATCAACAACCTCCACCACAGCAAATACCCAGCCAACAAACTCCTCCCGGTTTCCAACAAACGAGACAAAATCTCCCATCTTCTTCAAACTCTCGAAGAGACAATTCTTTAGACCAAAAGCTCGAGAGTATATTGGAAACCCTTAAGCAAATGCAAACACATAGCAAAATGGTGGATAACCAAATTGCTCAACTTGCTCAACCCTCTAGACCTCAAGCACTCCCAGCTCAACCTACTCAACCCAATAACGAACATGTGAATGCGGTAACGCTTAGGAGTGGAAAGGCCCTTGAAGATCCTAAGTCTAAACCTAGACCCTCTAGTGCTTTACCCAATTCACCTAATGAGGAGCCTAGCGTGATTGAGGAAGATTCTAATGTTGAGGGGAACCTTAAGGAGAGTCATAACCTTTCTAGTCCCCCTAGAGAACTAGCACCCTCTTTGCCTTTCCCTCATAGACAGGTTGACACCAAGGTTGACAAGCAATTTAGTCGATTTGTGGAAATTCTAAAAAAGTTGCAGTTAAATGTGCCTTTCACTGATATGTTCACCCAAATGCCCACCTATGCTAAATTTTTGAAAGACATTCTCACTAGAAAACGTAGTTTAGAGGCAGTTGAGACGGTAGCCTTCGCTGAACAATGTAGCAACATCCTCTTAAACAAGGCCCCTCCTAAGTTGAAAGACCCAGGCACTTTTGCTATCCCATGTGTTTTGGGTGATTTTAGAGTTGAGAATGCTTTGTGTGATTTGGGTGCTAGTGTTAGTGTTATGCCACTTTCAATTTGTAAGAAGCTTGACCTTGGAGAGATTAAGGTCACCTCCATGACCCTCCAAATGGCGGATCGCTCCGTCAAACACCCTATAGGAGTCTTGGAGGACGTACCCGTCCGTGTAGGGAAATTCTACTTTCCCGTAGACTTTGTGGTCTTAGAGATGGATGAGGATTCTCAAATCCCCATAATTCTTGGACGACCTTTCTTGGCTACAGCTGGGGCCTTGATTGATGTGAGAAATGGTAAAATCTCCTTGCAAGTGGGTGATGAAAAGCTTGAATTCTTACTACCTAATGCTATGCAACACCCCTCTTCCCTTGATTGTTGTTATAGGATTGATGTGCTTGATGAAGTATTACAGGAATTTGAACCCTTGCATATATGTGGCGAGCCGTTGAACCCCTTCTTCAACAGTGAAACAATCAAGGAGAGTGATGAATATATTTGTCATGTAGCACAGGTAATGGATTCTGCACCCATTGAGAAGGATGACTCACCAATGGAACAACCTGTGGAAGACCCTATTCCACAAAGACAAGGTAACACTTCCTCTCTTGAACTTAAGCCCCTTCCCCCTTCTCTCAAGTATGCGTATTTGGATTCCGAGCATAAATTCCCAGTTATCGTTAACGCTAAACTCAATAGCCCCGAGCTTTCTAAGTTGTTGTCGGTTCTCCGAAAACACAACAAAGTTATTGGGTATAGCATCGACGATCTCACGGGAATAAGCCCCTCTTTATGTATGCATCGTATCTCTTTGGAAGACGGTTCTAAGTCTTCCATTGAGCATCAAAGGCGGCTCAATCCTAATATGCAAGAAGTGGTCCGTAAAGAAATTTTGAAACTACTTGAAGCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_415560.p1 GENE.R_Transcript_415560~~R_Transcript_415560.p1 ORF type:3prime_partial len:955 (+),score=128.08,Retrotrans_gag|PF03732.13|4.5e-17,gag-asp_proteas|PF13975.2|3.8e+03,gag-asp_proteas|PF13975.2|5.9e-09,Asp_protease_2|PF13650.2|8.5e-06 R_Transcript_415560:29-2890(+)
MITRSQGQQDLIPLNLEIEAEARRLSSSQRRRRRRQVAQQQTMADQPMRNYGVPSLTSTGNAISRQTTENHTFELKPALINLIKDDRFSGLPHEMPLDHLNTFVEKCDTIKINGITDDMIRLKLFPFSLMGNARTWLQNKPPNTYADWESLAKAFLEKFYPPTKTERYREEILQFRQQPTETLSEAWERFKELLRKCPHHGLPDFLILSSFTKHLSADDKRALDSASNGSFMGKTYAQGKALIEELATSSFSWSERNTPPPKGGGNIDLDSIQILAEKLDSLTLKVERLQSISTPSQESVKMLRNVQSYGHANPSSPFDPNISQVNAVQNAPMMTPLCEICGIYGHFPAECNLVVSENVNAVTQYQGRPQGNPYPNSFNTQYRGNPQGYNYQSQQQQYHRPPPYSQQPTYYQQPPPQQIPSQQTPPGFQQTRQNLPSSSNSRRDNSLDQKLESILETLKQMQTHSKMVDNQIAQLAQPSRPQALPAQPTQPNNEHVNAVTLRSGKALEDPKSKPRPSSALPNSPNEEPSVIEEDSNVEGNLKESHNLSSPPRELAPSLPFPHRQVDTKVDKQFSRFVEILKKLQLNVPFTDMFTQMPTYAKFLKDILTRKRSLEAVETVAFAEQCSNILLNKAPPKLKDPGTFAIPCVLGDFRVENALCDLGASVSVMPLSICKKLDLGEIKVTSMTLQMADRSVKHPIGVLEDVPVRVGKFYFPVDFVVLEMDEDSQIPIILGRPFLATAGALIDVRNGKISLQVGDEKLEFLLPNAMQHPSSLDCCYRIDVLDEVLQEFEPLHICGEPLNPFFNSETIKESDEYICHVAQVMDSAPIEKDDSPMEQPVEDPIPQRQGNTSSLELKPLPPSLKYAYLDSEHKFPVIVNAKLNSPELSKLLSVLRKHNKVIGYSIDDLTGISPSLCMHRISLEDGSKSSIEHQRRLNPNMQEVVRKEILKLLEA

Click here to download the sequence:
Link to NCBI Protein BLAST