Transcript Information: R_Transcript_41827.p1


Annotated TAIR IDAT5G35690.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:13865027-13868117 | Reverse length=603
E-Value7.6E-169
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 130.448885538813
Replicate 219.019070332252
Replicate 326.365004408128
Condition 2: 8 Hour
Replicate 118.922559309007
Replicate 224.199220408099
Replicate 332.314750745711
Condition 3: 24 Hour
Replicate 125.188386405284
Replicate 219.351923720133
Replicate 324.210615049782


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_41827.p1 GENE.R_Transcript_41827~~R_Transcript_41827.p1 ORF type:complete len:669 (+),score=169.44,WLM|PF08325.6|2.9e-41,PUB|PF09409.6|2.5e+03,PUB|PF09409.6|5.1e-14 R_Transcript_41827:275-2281(+)
ATGGCGCGACATCAATGCATTATTAGGGTTTCTGTTATATGGAGGAACAAGAAGTTTGTAGTCGAACTAAATTCAGAGGCCTCTCTTAAAGAGTTGGGAGAGGAGCTGCTTAATTTGACCGATGTTAAAGCAGACACTATAAGATTGATCATCCCTCAGTCTTCCACTAAAAGCTCCAAGATGTTTGTACCTTTTTCTGTTGAGCATTCCATTCTTAAGCTGGAAGATATTGGGATCATGGAGGGAAAGCCTTTAAGAATGATGGGAGTTTCTGGACATGAGGTTGATCAGCTTCTTAAGGATGCAAAAGCAAATTTGAGAATTGCTGGATTTGAGGATGAAGAGAAAAGGATGAAGCAATGGATATCTAGGGGATTTCAACTCCCAATCAAACTTCCTGAAGGACCTTACATCTTTTGCGGTTTTCGCACACTTGAACTTCCTGGAATAGAGTTAAATCCTCCTCCTTCGGAGGCATTGAAGAGAATGCACATGCTTGCTGCTGACCCAGGAATTGTTGCCATCATGATAAAGCATCGTTGGCAAGTTGGGATCATGACAGAGATGGCACCTGAAGGCTATGTTGGTATTAGTCCTGTATGCCTTCTTGGTTTGAACAAGAATCATGGAGAAGAAATATCTCTTCGTCTTCGGACAGATGACCTCAAGGGTTTTAGGAAGTATGAAATTATCAAGAAAACTTTGCTGCATGAACTAGCTCACATGGTCTACTCAGAGCATGATTCAAACTTCTATGCCCTTGATAGACAGCTTAATGAGGAAGCTTTTGCTTTAGATTGGACAAGATCCAGAAGTAATACCTTGTCTAATTCCCGTTTTTTGGGACATGATGATATGGACGAAGAGTATGAATCAGGTGGCAACTTATCCCACAAGCTTGGAGGAGAAACTTCACATATGACTGCCTCTGCTCGTGCAGCTTCTGTGGCTGCTGCTTATTATCGTTTGGCTGATTCTTCTACCATTCATCAACAGTCTAATGACCAAGATTCTGACAATCACAAAGCTGAAGCTCATAGGAACTCTCAATCACTCGAATCTGTGAAGGACGAGCTGGTCACAGGAGGCCAGCCTGATCACTGCTCTCCTAGAAAGAATATGCTGGAACCTGATCCGGACGATGCTGAGGCCAGAGATAATATGAACTTAGAGTCTCAAGGTGTAACTCATATAGAGTCTGACTGTGCTGACACTGAGATGACTGAAGTTGTCCCAAATTTCAATGCTAATGGAAGGTTTGATGGTGCAAATTTGTTGGAGGAACCTGACCCTGATGATTCAAAAGCTTCTGAGAAGTGTGTAACCGGTTCTGTTGATACTCAGTCTGTGCAAATTGAGACTAATTCCAGTAGGATGGGGATTAATGAAGAACCTGATCCAGATGATTTGAAAGCAGAAGATAATGCAGGGAAGTCCACAAGAGCTAATGCAGTTAGTGAGAGCAGAAAAAATCAGTCACAACTGAGAACGTTCAATCTGGAACCAGACCCTTATGATCCTCAAGACAATAGATTAGGGGGGCCACAGTCTAATCCAGATGGTAAGTCTGAAAACTCGATGCTAACTTTGGGAGACATGACCGAGGAGCCAGATCCAGATGATCAAGAATTAAGAAGAATTCAAGACCCCGTAGCTGCTTTTTGTGACCGAATTACCAAAGCCATTGAGAAGTTGCATGATGAACTCAGACCCTCAGAGGCCATTGTAGTCTTACAAACTCTGTTGAGAATTATCAGTAATATAACTGGAAATCCTAATGAACTGAAGTACAAAAGACTTCGCAAGGCAAATCCCGTATTCCAAAGGAGCATTGCATATAATAAAGTGGCAATGGACATTCTCGCCTTGATTGGTTTTGGTGAAGATATTGTCACTGATGAAAGTGGAAAGTTGGAAACCTACCTGGTGTTGAGACGGAATGACCCTGCGATGCTCTGGCTTGCAAAATCCATCCTTGAGACATCCCTTAGTAACTGGTCCAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_41827.p1 GENE.R_Transcript_41827~~R_Transcript_41827.p1 ORF type:complete len:669 (+),score=169.44,WLM|PF08325.6|2.9e-41,PUB|PF09409.6|2.5e+03,PUB|PF09409.6|5.1e-14 R_Transcript_41827:275-2281(+)
MARHQCIIRVSVIWRNKKFVVELNSEASLKELGEELLNLTDVKADTIRLIIPQSSTKSSKMFVPFSVEHSILKLEDIGIMEGKPLRMMGVSGHEVDQLLKDAKANLRIAGFEDEEKRMKQWISRGFQLPIKLPEGPYIFCGFRTLELPGIELNPPPSEALKRMHMLAADPGIVAIMIKHRWQVGIMTEMAPEGYVGISPVCLLGLNKNHGEEISLRLRTDDLKGFRKYEIIKKTLLHELAHMVYSEHDSNFYALDRQLNEEAFALDWTRSRSNTLSNSRFLGHDDMDEEYESGGNLSHKLGGETSHMTASARAASVAAAYYRLADSSTIHQQSNDQDSDNHKAEAHRNSQSLESVKDELVTGGQPDHCSPRKNMLEPDPDDAEARDNMNLESQGVTHIESDCADTEMTEVVPNFNANGRFDGANLLEEPDPDDSKASEKCVTGSVDTQSVQIETNSSRMGINEEPDPDDLKAEDNAGKSTRANAVSESRKNQSQLRTFNLEPDPYDPQDNRLGGPQSNPDGKSENSMLTLGDMTEEPDPDDQELRRIQDPVAAFCDRITKAIEKLHDELRPSEAIVVLQTLLRIISNITGNPNELKYKRLRKANPVFQRSIAYNKVAMDILALIGFGEDIVTDESGKLETYLVLRRNDPAMLWLAKSILETSLSNWSN*

Click here to download the sequence:
Link to NCBI Protein BLAST