Transcript Information: R_Transcript_41842.p1


Annotated TAIR IDAT4G03180.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:1403289-1404663 | Forward length=185
E-Value5.4E-54
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 148.577986032929
Replicate 266.210555810125
Replicate 358.660640193322
Condition 2: 8 Hour
Replicate 152.340155760249
Replicate 261.75862603756
Replicate 352.053825165343
Condition 3: 24 Hour
Replicate 155.633204816341
Replicate 262.664941927196
Replicate 356.514285117491


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_41842.p1 GENE.R_Transcript_41842~~R_Transcript_41842.p1 ORF type:complete len:189 (+),score=58.12,rRNA_processing|PF08524.7|6.2e+02,rRNA_processing|PF08524.7|5.6e-13 R_Transcript_41842:287-853(+)
ATGAAGAATTGGAAATCGAAAGATGGCGAAACCCAACAGGAGCAAGTTAGCAACAACAAACACAACAAGAAGAATATGAGGAAGAACTTGCAAAGATTAGGGGGTTCAGGCCTTTCTCTTCAAGCCTTTGCTAATGCTAAATCCAGAACCAATTCCTACAATCCTGCTTTGCTAAAAAAGAAAAGAGAATTCTACAAGAATGCTAAACATGTGAGCAAGTACAAGAAAATGCTTAAGCAACAAAGCCAACAGACTGATCCATCCTCTTCTGTGCAGCCTGTTGAGGAGAATGAATACGGGGATGATGTTCAAATGAATAAGAAAGACAAGAAAAAGGGAAAGGGATCATACAGTTTAAATGACTTGTATGAGAAGAAGCGTGAAGAAGAAGAGAAAGCAAGGATGGAAAGGGAAGCCAGAATCAAAGCGAAAAAGGAAGAACAAGAAAGGGCTGAAGCCCGCCGAAAGGCTTTAAGGGAAAAAATGTTTAAAAGGACTCAGAAAGGCCAGCCTGTCATGAAGTACAGAATTGAGCACCTTTTGGAAACTATACAGCGCTCTACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_41842.p1 GENE.R_Transcript_41842~~R_Transcript_41842.p1 ORF type:complete len:189 (+),score=58.12,rRNA_processing|PF08524.7|6.2e+02,rRNA_processing|PF08524.7|5.6e-13 R_Transcript_41842:287-853(+)
MKNWKSKDGETQQEQVSNNKHNKKNMRKNLQRLGGSGLSLQAFANAKSRTNSYNPALLKKKREFYKNAKHVSKYKKMLKQQSQQTDPSSSVQPVEENEYGDDVQMNKKDKKKGKGSYSLNDLYEKKREEEEKARMEREARIKAKKEEQERAEARRKALREKMFKRTQKGQPVMKYRIEHLLETIQRST*

Click here to download the sequence:
Link to NCBI Protein BLAST