Transcript Information: R_Transcript_41879.p1


Annotated TAIR IDAT5G48330.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19585989-19587729 | Forward length=455
E-Value8.4E-183
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.034031779881
Replicate 28.5471665411479
Replicate 311.554726044077
Condition 2: 8 Hour
Replicate 110.726108981315
Replicate 211.922505583464
Replicate 313.894816979323
Condition 3: 24 Hour
Replicate 114.424816930681
Replicate 211.954731035822
Replicate 314.672510000287


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_41879.p1 GENE.R_Transcript_41879~~R_Transcript_41879.p1 ORF type:complete len:452 (+),score=104.69,RCC1|PF00415.14|1.2e-07,RCC1|PF00415.14|1.6e-09,RCC1|PF00415.14|1.5e-10,RCC1|PF00415.14|0.0024,RCC1|PF00415.14|1.6,RCC1|PF00415.14|5.3e-05,RCC1|PF00415.14|0.29,RCC1|PF00415.14|4.8e-11,RCC1_2|PF13540.2|4e+02,RCC1_2|PF13540.2|1e-10,RCC1_2|PF13540.2|5.1,RCC1_2|PF13540.2|0.0063,RCC1_2|PF13540.2|5.2e-06,RCC1_2|PF13540.2|0.0031,RCC1_2|PF13540.2|0.00095,RCC1_2|PF13540.2|28 R_Transcript_41879:728-2083(+)
ATGTTGCGATCCTTTTGCAAGAATTGCAGTATCACTGCTTACTTCTCGAGAAGTAGATACTTTAGCGGCGGGGCTGGCAATGGGAATGTAAGCTCGTCATTTGCAGTCATGAGCTTTGGGGATGGAAGTCATGGTGCTCTGGGTCTACCATCTTCCCTAATTGGTGTCGGAGCAGACGCGTATGAGCCAACTATAGTTCCTGGGCTCCCATCTGATGTGGTGAGTGTGAGTGCTGGGCATTACCACTCTCTTGCTGTGACGGCAAAAGGTGAGTTGTGGGCTTGGGGTAGAAATGATGAGGGCCAGCTTGGTAGAGGTCTACTTGCACCCAGGCATTCATGGAATGAACCAAAGCACGTGGAAGGACTAAAAGATGTAAAAGTTCGAGCTGCATTTGCATCTGGTGTTATTTCTGTTGCCATTGATGATGTTGGATCTATGTGGACATGGGGACGGTCCAAGCGTGGGCAGCTTGGGCTTGGGAATGGAATCACCGAGGCTGTTGTACCGACAAGAGTTGAAGCCCTTGCACGAGAAGATATAGCCAAGGTTTCACTAGGTTGGGGTCACGTGCTTGCACAAACTGTTGACGGAAAATTGTATGGATGGGGTTACTCAGCAGATGGTAGACTAGGACGACTTGGAGCCACTGTAAAGTCATCACCATTGGATTCAAGAGCAGAGCTACCCAGAAGTCATGAAATTAATACTAATGAGGCCCTACAAATTGCTGAGAAGCTTGTCTTAGAAAGCATGGACAAGGAAAAGGACATGCCAATTGCCTGGGAACCTTACTCAATAGATGAAGTGCAGTCCATTGCCGTCACTGATGTTTCCTGTGGCCTTGATCATTCTTTAATCATTTGCCGTGACGGCACCATGCTAAGTGGTGGGAGTGACACATATGGTCAGTTGGGAAGAGAGAAACAAGATATAGGCCTTTTTCCCGTTGACATAGACTTTTGTCCATCGTCTATTGCCTGTGGGCTCGGACACTCTATAGCAATCTGTACAATGCCAGCTTCAGACGTTGACAATGATTCTAGAAAAGTCATTGTCTCTTGGGGCTGGAACCAGTGCTCTCAGCTAGGAAGAGCAGGGCCAGAGAGCAAAGCTTTGGTGGTGGAAGGTTTGATTGAGGAGATACCGGCAACAGTTTCTGCTGGTCGTGTGCATTCACTTTGTGTCACTGTCAACGGGGAGTTGTGGTCTTGGGGCTGTGGTAAAAATGGTAGGCTTGGTTTAGGCAGCTCCTTTGATGAACCAGAGCCTGTCCTTGTCGATTGTGGAGGTCATAGAGTTGTCCAAGCTGCAGCTGGCTTTGATCACAATCTGCTCTTGGTTGCTGAATCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_41879.p1 GENE.R_Transcript_41879~~R_Transcript_41879.p1 ORF type:complete len:452 (+),score=104.69,RCC1|PF00415.14|1.2e-07,RCC1|PF00415.14|1.6e-09,RCC1|PF00415.14|1.5e-10,RCC1|PF00415.14|0.0024,RCC1|PF00415.14|1.6,RCC1|PF00415.14|5.3e-05,RCC1|PF00415.14|0.29,RCC1|PF00415.14|4.8e-11,RCC1_2|PF13540.2|4e+02,RCC1_2|PF13540.2|1e-10,RCC1_2|PF13540.2|5.1,RCC1_2|PF13540.2|0.0063,RCC1_2|PF13540.2|5.2e-06,RCC1_2|PF13540.2|0.0031,RCC1_2|PF13540.2|0.00095,RCC1_2|PF13540.2|28 R_Transcript_41879:728-2083(+)
MLRSFCKNCSITAYFSRSRYFSGGAGNGNVSSSFAVMSFGDGSHGALGLPSSLIGVGADAYEPTIVPGLPSDVVSVSAGHYHSLAVTAKGELWAWGRNDEGQLGRGLLAPRHSWNEPKHVEGLKDVKVRAAFASGVISVAIDDVGSMWTWGRSKRGQLGLGNGITEAVVPTRVEALAREDIAKVSLGWGHVLAQTVDGKLYGWGYSADGRLGRLGATVKSSPLDSRAELPRSHEINTNEALQIAEKLVLESMDKEKDMPIAWEPYSIDEVQSIAVTDVSCGLDHSLIICRDGTMLSGGSDTYGQLGREKQDIGLFPVDIDFCPSSIACGLGHSIAICTMPASDVDNDSRKVIVSWGWNQCSQLGRAGPESKALVVEGLIEEIPATVSAGRVHSLCVTVNGELWSWGCGKNGRLGLGSSFDEPEPVLVDCGGHRVVQAAAGFDHNLLLVAES*

Click here to download the sequence:
Link to NCBI Protein BLAST