Transcript Information: R_Transcript_41908.p1


Annotated TAIR IDAT5G04170.1
Annotated Gene NameCalcium-binding EF-hand family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1145579-1147519 | Forward length=354
E-Value6.4E-120
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 122.483779719058
Replicate 226.975379342793
Replicate 324.802990708417
Condition 2: 8 Hour
Replicate 139.404405180004
Replicate 247.831555196708
Replicate 349.285830161316
Condition 3: 24 Hour
Replicate 128.735268649246
Replicate 225.706791819481
Replicate 329.352716550309


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_41908.p1 GENE.R_Transcript_41908~~R_Transcript_41908.p1 ORF type:5prime_partial len:302 (+),score=9.68,EF-hand_1|PF00036.28|0.00031,EF-hand_1|PF00036.28|3.8e+02,EF-hand_1|PF00036.28|2.5e-07,EF-hand_1|PF00036.28|7.8e+03,EF-hand_1|PF00036.28|4.7e+03,EF-hand_6|PF13405.2|0.0008,EF-hand_6|PF13405.2|2.1e+03,EF-hand_6|PF13405.2|2.7e-07,EF-hand_6|PF13405.2|1.2e+04,EF-hand_6|PF13405.2|5.8e+03,EF-hand_7|PF13499.2|0.0032,EF-hand_7|PF13499.2|5.5e-06,EF-hand_5|PF13202.2|0.00044,EF-hand_5|PF13202.2|5.3e-05,EF-hand_8|PF13833.2|1.1,EF-hand_8|PF13833.2|0.021,EF-hand_8|PF13833.2|0.48 R_Transcript_41908:3-908(+)
CCCTTGATCGAAATCCCATCAGTATTTTCTGTCTCCTCAAACTCAAAAAAAAAAAAAAAAAAAAAAACTCTATTGATCATCAAAATGTCAGGTTACGGATACCCCCACAACCCCCCGGGCTACGGCTACGGTGGGCCTCCGCCACAGACAGCCCAACCCTACGGCCATGCACCCCCCTACGGTGGCCCAGGCCCACATTCCCCCACAGCCCAACCCTACAGCGGTGGGCCCCCCTCAGCCCCGCCCTACGAGAAGCCCCCGAAGGAGAACAAGCCCTACAGCGCGTCAGCATACGCGAACCCCCCACCAGGGGCGTCGTCGGGGTACCCGTCGTATGGCGGGTCGGGTAGCCCGTTTGCGAGCTTGTTGCCGTCGACGTTCCCGCCGGGTACAGACCCGAATGTGGTGGCGTGTTTCCAGGTGGCGGACCAGGATGGGAGTGGGTTGATTGATGATAAGGAGCTTCAAAGAGCTTTGTCTTCTTATAATCAGAGCTTTAGCCTTCGCACTGTTCATCTCCTCATGTTCAATTTCACCAACTCCAATTCTCGCAAGATCGGTCCTAAGGAGTTTACATCTCTGTTCTACAGTCTGCAGTCCTGGAGGGAAATATTCGAGAGATTTGACAGAGACAGGAGTGGCAAGATAGATGTTGCAGAGCTGCGTGATGCCTTGTATAGCCTTGGATTTGCCGTCTCTCCTACAATTCTGGATTTGCTTGTCTCCAAGTTTGATAAGACTGGGGGGAAGAGTAGGGCTATCGAATATGATAACTTCATCGAGTGCTGCCTTACAGTAAAGGGTCTGACAGAGAAATTCAAGGAGAAGGACAAGGCGTACACTGGCACCGCAACCTTTACTTATGAGGAGTTCATGCTCACAGTTTTACCCTTTCTTATCGCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_41908.p1 GENE.R_Transcript_41908~~R_Transcript_41908.p1 ORF type:5prime_partial len:302 (+),score=9.68,EF-hand_1|PF00036.28|0.00031,EF-hand_1|PF00036.28|3.8e+02,EF-hand_1|PF00036.28|2.5e-07,EF-hand_1|PF00036.28|7.8e+03,EF-hand_1|PF00036.28|4.7e+03,EF-hand_6|PF13405.2|0.0008,EF-hand_6|PF13405.2|2.1e+03,EF-hand_6|PF13405.2|2.7e-07,EF-hand_6|PF13405.2|1.2e+04,EF-hand_6|PF13405.2|5.8e+03,EF-hand_7|PF13499.2|0.0032,EF-hand_7|PF13499.2|5.5e-06,EF-hand_5|PF13202.2|0.00044,EF-hand_5|PF13202.2|5.3e-05,EF-hand_8|PF13833.2|1.1,EF-hand_8|PF13833.2|0.021,EF-hand_8|PF13833.2|0.48 R_Transcript_41908:3-908(+)
PLIEIPSVFSVSSNSKKKKKKKTLLIIKMSGYGYPHNPPGYGYGGPPPQTAQPYGHAPPYGGPGPHSPTAQPYSGGPPSAPPYEKPPKENKPYSASAYANPPPGASSGYPSYGGSGSPFASLLPSTFPPGTDPNVVACFQVADQDGSGLIDDKELQRALSSYNQSFSLRTVHLLMFNFTNSNSRKIGPKEFTSLFYSLQSWREIFERFDRDRSGKIDVAELRDALYSLGFAVSPTILDLLVSKFDKTGGKSRAIEYDNFIECCLTVKGLTEKFKEKDKAYTGTATFTYEEFMLTVLPFLIA*

Click here to download the sequence:
Link to NCBI Protein BLAST