Transcript Information: R_Transcript_419525.p1


Annotated TAIR IDAT5G03340.1
Annotated Gene NameATPase, AAA-type, CDC48 protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:810091-813133 | Reverse length=810
E-Value7.1E-159
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.068620153965108
Replicate 20.078933460211647
Replicate 30.17223110974551
Condition 2: 8 Hour
Replicate 10.092052123861824
Replicate 20.084063465568367
Replicate 30
Condition 3: 24 Hour
Replicate 10.25892263790644
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_419525.p1 GENE.R_Transcript_419525~~R_Transcript_419525.p1 ORF type:internal len:266 (+),score=46.52,AAA|PF00004.25|1e-48,RuvB_N|PF05496.8|9.6e-06,RuvB_N|PF05496.8|5.1e+03,AAA_16|PF13191.2|0.0013,AAA_16|PF13191.2|21 R_Transcript_419525:3-797(+)
CTCAAGAATATGAAGCTTGATGACGACGTAGATTTACTTAAAATCGCAAAAGAAACACATGGTTATGTTGGTGCTGATTTGGCGCAACTTTGCACTGAAGCAGCTCTTGGTTGCATTAGAGAGAAAATGAATCTTATCGATATCGAAGGTGAAACTATTGACGCGGCCGTTCTTGACTCTCTTGCTGTTACAAATGAACACTTCAAAGCTGCTATGTCTAATACCAATCCATCTGCACTTCGTGAAACTGTTGTTCAAATTCCAGATGTTACTTGGGAAGACGTTGGTGGTTTACACGAAGTTAAAGAAGAACTTCAAGAAACAGTTATGTACCCAATTCTCCACCCTGATAAATTCGAGAAATTTGGAATGAAACCTTCAACTGGTGTTCTTTTCTACGGACCCCCTGGTTGTGGTAAAACACTTCTCGCAAAAGCTATCGCGAATAATTGCGGTGCCAACTTTATTTCCATCAAAGGTCCTGAATTATTGACGATGTGGTTTGGTGAGTCTGAAGCCAACGTTAGAGAGCTGTTCGATAAAGCGAGACAAGCTGCCCCTTGTGTACTTTTCTTTGACGAATTGGATTCGATTGCCAGAGCCAGAGGAGGAAGTGCTGGTGATGCTGGAGGTGCTGGAGATCGTGTAATTAATCAACTTTTAACCGAGATGGATGGTATTGAAAGTAAAAAAAATGTTTTTGTCATTGGTGCCACCAATCGACCCGACATCTTGGATAGTGCTATTACTAGACCCGGTCGTCTTGATCAAAAGATCTATATTCCAATGCCCGAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_419525.p1 GENE.R_Transcript_419525~~R_Transcript_419525.p1 ORF type:internal len:266 (+),score=46.52,AAA|PF00004.25|1e-48,RuvB_N|PF05496.8|9.6e-06,RuvB_N|PF05496.8|5.1e+03,AAA_16|PF13191.2|0.0013,AAA_16|PF13191.2|21 R_Transcript_419525:3-797(+)
LKNMKLDDDVDLLKIAKETHGYVGADLAQLCTEAALGCIREKMNLIDIEGETIDAAVLDSLAVTNEHFKAAMSNTNPSALRETVVQIPDVTWEDVGGLHEVKEELQETVMYPILHPDKFEKFGMKPSTGVLFYGPPGCGKTLLAKAIANNCGANFISIKGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARARGGSAGDAGGAGDRVINQLLTEMDGIESKKNVFVIGATNRPDILDSAITRPGRLDQKIYIPMPD

Click here to download the sequence:
Link to NCBI Protein BLAST