Transcript Information: R_Transcript_420380.p2


Annotated TAIR IDAT4G35800.1
Annotated Gene NameRNA polymerase II large subunit
Annotated Gene Symbol(s)NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_I
Annotation TypeOrtholog
Chromosome Positionchr4:16961115-16967892 | Reverse length=1839
E-Value3.8E-48
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.72401035918269
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.26388284169775
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_420380.p2 GENE.R_Transcript_420380~~R_Transcript_420380.p2 ORF type:5prime_partial len:87 (+),score=16.41,RNA_pol_Rpb1_R|PF05001.9|0.05,RNA_pol_Rpb1_R|PF05001.9|57,RNA_pol_Rpb1_R|PF05001.9|0.088,RNA_pol_Rpb1_R|PF05001.9|0.079,RNA_pol_Rpb1_R|PF05001.9|0.31,RNA_pol_Rpb1_R|PF05001.9|40,RNA_pol_Rpb1_R|PF05001.9|0.016,RNA_pol_Rpb1_R|PF05001.9|0.012,RNA_pol_Rpb1_R|PF05001.9|0.022,RNA_pol_Rpb1_R|PF05001.9|1.7 R_Transcript_420380:3-263(+)
CCAGCTTATTCACCAACTAGTCCAAGTTATTCACCAAGCAGTCCAAACTATTCACCATCATCACCAGCTTACTCACCATCTAGTCCAAATTATTCACCATCTTCTCCTGCTTATTCACCAAGCAGCCCAAGTTACAATCCTGGTGGTGGTTATAGTCCTTCTTCACCTGCTTATTCTCCAACCAGTCCAAGTTATTCACCAACTAGCCCAAGCTACAGTCCATCGTCTCCTGCCTATTCACCAGGACGTGAAGATAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_420380.p2 GENE.R_Transcript_420380~~R_Transcript_420380.p2 ORF type:5prime_partial len:87 (+),score=16.41,RNA_pol_Rpb1_R|PF05001.9|0.05,RNA_pol_Rpb1_R|PF05001.9|57,RNA_pol_Rpb1_R|PF05001.9|0.088,RNA_pol_Rpb1_R|PF05001.9|0.079,RNA_pol_Rpb1_R|PF05001.9|0.31,RNA_pol_Rpb1_R|PF05001.9|40,RNA_pol_Rpb1_R|PF05001.9|0.016,RNA_pol_Rpb1_R|PF05001.9|0.012,RNA_pol_Rpb1_R|PF05001.9|0.022,RNA_pol_Rpb1_R|PF05001.9|1.7 R_Transcript_420380:3-263(+)
PAYSPTSPSYSPSSPNYSPSSPAYSPSSPNYSPSSPAYSPSSPSYNPGGGYSPSSPAYSPTSPSYSPTSPSYSPSSPAYSPGREDK*

Click here to download the sequence:
Link to NCBI Protein BLAST