Transcript Information: R_Transcript_420639.p1


Annotated TAIR IDAT4G21540.1
Annotated Gene Namesphingosine kinase 1
Annotated Gene Symbol(s)SPHK1
Annotation TypeHomolog
Chromosome Positionchr4:11459609-11462356 | Forward length=485
E-Value2E-41
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.86643802000247
Replicate 20.13288797731834
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.070762284307549
Replicate 30.17232541728216
Condition 3: 24 Hour
Replicate 10.072651288695266
Replicate 20
Replicate 30.2770595529987


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_420639.p1 GENE.R_Transcript_420639~~R_Transcript_420639.p1 ORF type:3prime_partial len:316 (+),score=58.23,DAGK_cat|PF00781.20|1.1e-27 R_Transcript_420639:2-946(+)
ATGTCCTCCAACTATTACTATGACAGAAGCCCAAAAGATCCAGAGATCATCCAAAAGAAGGGAACCGTAAAATTTAATGATAGCACTTGTGAGATGGTGATCAGATCAGACAGGATCATCCTCAAACAATCTGATCCTTCAATATTTGCAAATTTTGCAAAACTGGAAACAATCATACCCATGGACATCATCTTGGGTGTGGAACAGAATAAATTTTTCAAAAGAAGATTTGGAATACATGCATATCCTAAGAATCCAACATCCAAGAAGAGATACCAAGAGATCTACGAGATAGAATGCAAAGAGAAATCAGAATGTGACGAATGGACAAGAGCAATAGAAAATTGTGCGAGAGAAGGAGATGTTGATAGAGATGCAAGAGTGCCTAAATTGCTGTTCATCATCAATCCCTTTTCTGGAACCAAGAAAGCACTCTCAGTATTCGAGACTAAGGTCAAACCCTTGCTGGATATCGCAAAAGTGAAATATGAGACACTGGAGACCCAATATGCAGGACATGCCTCAAAATTCACATCAACTTTAGATTTGGAGAAATATGATGCACTGATCACCATCAGCGGAGATGGATTGTTCTACGAAATGTTGAATGGCTTGTTGGCAAGAAAAGATTGGGAACAAGCTATGAAAACTCCTATTGCTGTCATTCCTGGTGGAAGTGGTAATGCTCTCGCCACTGCCATGGTGGATGTTTTGGATCCTCTCACATCAGCCTTCAACGTGATCAAGGGAATGGCCAAGCCCTTCGACATTGGAAGCGTTCTGCAAAAAGATAGGAGGACATTCTTCTTCCTTGCATTTTCATGGGGAATAGTCGCAGACGTAGATTTCGACAGTGAATCTCTCAGATGGATGGGATCTGCAAGATTTACTGTGACAGCTCTTAAGAAGATTGCAAACTTTAAACTTTATAAAGGAAAAGTTGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_420639.p1 GENE.R_Transcript_420639~~R_Transcript_420639.p1 ORF type:3prime_partial len:316 (+),score=58.23,DAGK_cat|PF00781.20|1.1e-27 R_Transcript_420639:2-946(+)
MSSNYYYDRSPKDPEIIQKKGTVKFNDSTCEMVIRSDRIILKQSDPSIFANFAKLETIIPMDIILGVEQNKFFKRRFGIHAYPKNPTSKKRYQEIYEIECKEKSECDEWTRAIENCAREGDVDRDARVPKLLFIINPFSGTKKALSVFETKVKPLLDIAKVKYETLETQYAGHASKFTSTLDLEKYDALITISGDGLFYEMLNGLLARKDWEQAMKTPIAVIPGGSGNALATAMVDVLDPLTSAFNVIKGMAKPFDIGSVLQKDRRTFFFLAFSWGIVADVDFDSESLRWMGSARFTVTALKKIANFKLYKGKVE

Click here to download the sequence:
Link to NCBI Protein BLAST