Transcript Information: R_Transcript_42151.p1


Annotated TAIR IDAT1G05120.1
Annotated Gene NameHelicase protein with RING/U-box domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:1471624-1476067 | Reverse length=833
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.8458145878117
Replicate 24.8538637229618
Replicate 36.6315369711024
Condition 2: 8 Hour
Replicate 16.8030717032643
Replicate 27.6828480557202
Replicate 38.6042099123149
Condition 3: 24 Hour
Replicate 18.7156892762652
Replicate 26.7124700971322
Replicate 38.8664933090082


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42151.p1 GENE.R_Transcript_42151~~R_Transcript_42151.p1 ORF type:complete len:943 (+),score=200.89,SNF2_N|PF00176.19|7.3e-65,Helicase_C|PF00271.27|5.4e-15,zf-C3HC4_3|PF13920.2|1.6e+04,zf-C3HC4_3|PF13920.2|3.2e+02,zf-C3HC4_3|PF13920.2|2.9e-07,zf-RING_5|PF14634.2|1e+04,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|2.5e-06,zf-RING_2|PF13639.2|1.2e+04,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|5.2e-06,zf-C3HC4|PF00097.21|9.7e+03,zf-C3HC4|PF00097.21|8.5e-06 R_Transcript_42151:184-3012(+)
ATGGAACTGCGATCAAGGCGTCGACTGTCTGGGCCGTTTGATAATGGATGTGCTGGATCTACCATTTCTCAGTCAGATGAAGTACCTGCACAACTAGCAGCTGAGAAGGATTCTGGTTTATGCATGAACCAAGGAGAAGAAAGCGATATTATCCTGGATTCTGATTCTGATGTTAGTTCCAAAGCTGAAAGCAGTGATGGTGATTACGACATTGACAAGGAGATGTTAGATTTAAATGAGCCTCTAGATGTTCCAGACAGTGAGTTGGAGGATGACAATGATGACAAGGAAGTTGATGGTAAATATGTTAAAAACTCAAGAACAAAGTCGTCAAAGAAGAGGGAAAAATATTGCAATAAGCTGGGGAACAATGTTGATGAAAACAACACTGAAGCAGTTATTGATATCAATGAGCTAGGGGCTGAACAATTTGAGGGAATTAGTGGGTTTGAGTTTGTTGATCCAAGTGAGATGAAGAAGCAGAAGAAGAGAAAGAAGAATGGGGAAACAAGGTCAATATTGATGTGGGAGATTTGGGAAGAAGAGCACAATAGGTGGATTGATAAGCATATAAATGAAGATCTTGAATTTGATCAGAAGAATGAGACCATGAATGAAGTGTGTGAGGAACCCTCTGATTTAGGCACACAATTGTTGAGGTTTCAGAAAGAGTGGCTGGCGTGGGCATTGAAACAGGAGGAATCTGTGACTAGAGGGGGAATCCTTGCCGATGAGATGGGAATGGGGAAAACCATTCAGGCAATTGCACTTGTACTTGCCAAACGAGAACTTCGCCAGGGAATTTGTGGACCTGATGGGTCCTTGTTATCAGCAACTTCATCCACCATGTTGCCTCAAGTCAATTGCACCCTTGTAATCTGTCCTGCATCAGCTCTACATCAGTGGCAGAGGGAGATTGAGCGGTTTACACGGGATGGAAGTACGAAGGTGCTCTGTTATCAGGGGCCAAAGAGAGCACAGAATTCTCAACAATTTGCAGAGTATGATTTTATAATCACCACTTACAATACTATAGAGGCTGATTACCGGAAAGTTTTACCACCCAAGAAGAGGTGTGAATGGTGTGGGAAATGTTTTTTTGAACGTAAGATGGCTGTTCACCTCAAATATTATTGTGGGCCAAATGCTGTTAGAACAGAGAAACAGTCTAAGCAAGACAAGAAGGGAAAGAAATTTCATTGCCTAGTCTTAAAAAAGTCTTCTCATGATAAATCTAGTGGTGCAAATGGTGATAAGCTAGAGGTAGCTCAGAAAAAGAGTGGTAAAATACGGCGCCCTATCAGGAAGTCTAAAATTGAACCTGAGCAACCAGATATTGATGATGTTAAGGCCGGTGTGCGTACATCAAGTTTGCATTCTGTCAAGTGGGAGCGTGTTATATTGGATGAGGCTCACTGCATAAAAGATAGACGTAGTAATACTGCCAGGGCAGTTCTTGCACTGGACTCCTTGTACAAGTGGGCCTTGAGCGGGACCCCTCTTCAGAATCGTGTTGGAGAACTTTATTCTCTGATTCGCTTTCTTCAAATTGCTCCTTACTCTTACTATTTGTGCAAGGATTGTGATTGCAGAACCCTAGATTACAGTTCTACAGAATGCAAAAACTGCATTCACAAATCTGTAAGGCATTTTTGCTGGTGGAATAAAAATGTGGCCACACCAATGCAAGTGCACGGAAATTCAGGGCGGGGACAAAGATCCATGTTTTTGTTGAAAAACAAAATTCTTAAGGGCATTTTGCTGAGACGTACTAAGAATGGCAGGGCTTCAGATCTTGCTCTTCCTCCAAGAATTGTTTCACTAAGGCGAGATACTTTGGATATCAAAGAAAAAGATTATTATCAGTCATTGTACAATGAAAGTCAAGCCCAATTCAACACATATGTTAATAGAGGCACTGTGATGAATAATTATGCACACATATTCGACCTACTCACACGGTTACGGCAGGCAGTGGACCATCCATATCTTGTGGTATACTCCCGCACCAACGCTTTGAGAAATGAAAGTATTGCTGACATTGACCATGGCGAACAAACTTGTGGCATTTGTCATGATCCTGTTGAAGATCCTGTGGTTACATCATGCAGCCACAATTTTTGCAAATCTTGCCTGATTGATTTCTCCTCTACCCTGGGACAACCCTCATGTCCAACTTGCTCTAAACCCCTTACTGCTGATTTTACTTCAAACTCCATTACAGGAGCCCAGAGAGTGAGAACATCTGTAAATGGGTTTAGGAGCTCAAGCATTTTGAATCGCATTCAACTTGATGAGTTTCAGACAAGCACAAAAATTGATGCATTGAGGGAGGAAATCAGATTCATGATCGAGAGGGATGGATCTGCAAAAGGGATTATATTTAGCCAGTTCACATCATTTTTGGATTTGATTATGTATTCGTTGCAGAAGTCTGGCATATCCTGTGTTCTATTGGAGGGATCTATGACCATCACTGCTAGAGACAGTGTTATCAAACGATTTCACGAGGACCCTGATTGCAGAATTTTCCTCATTAGCTTGAAGGCTGGAGGTGTTGCTCTCAATCTTACGGTGGCTTCACATGTGTTCTTGATGGATCCCTGGTGGAATCCAGCTGCAGAGCGACAAGCTATGGATAGAATACACAGAATTGGGCAATATAAGCCAATAAGAATTGTGAGATTTGTGATAGAGAATACAATAGAGGAAAGAATTTTGAAGCTGCAAGAGAAGAAAGAATTGGTCTTTGAAGGGACTGTAGGTGGGTCTTCTGATGCTCTGGCTAAATTGACGGAGGCAGACTTAAAATTTCTCTTTGTTACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42151.p1 GENE.R_Transcript_42151~~R_Transcript_42151.p1 ORF type:complete len:943 (+),score=200.89,SNF2_N|PF00176.19|7.3e-65,Helicase_C|PF00271.27|5.4e-15,zf-C3HC4_3|PF13920.2|1.6e+04,zf-C3HC4_3|PF13920.2|3.2e+02,zf-C3HC4_3|PF13920.2|2.9e-07,zf-RING_5|PF14634.2|1e+04,zf-RING_5|PF14634.2|1.6e+04,zf-RING_5|PF14634.2|2.5e-06,zf-RING_2|PF13639.2|1.2e+04,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|5.2e-06,zf-C3HC4|PF00097.21|9.7e+03,zf-C3HC4|PF00097.21|8.5e-06 R_Transcript_42151:184-3012(+)
MELRSRRRLSGPFDNGCAGSTISQSDEVPAQLAAEKDSGLCMNQGEESDIILDSDSDVSSKAESSDGDYDIDKEMLDLNEPLDVPDSELEDDNDDKEVDGKYVKNSRTKSSKKREKYCNKLGNNVDENNTEAVIDINELGAEQFEGISGFEFVDPSEMKKQKKRKKNGETRSILMWEIWEEEHNRWIDKHINEDLEFDQKNETMNEVCEEPSDLGTQLLRFQKEWLAWALKQEESVTRGGILADEMGMGKTIQAIALVLAKRELRQGICGPDGSLLSATSSTMLPQVNCTLVICPASALHQWQREIERFTRDGSTKVLCYQGPKRAQNSQQFAEYDFIITTYNTIEADYRKVLPPKKRCEWCGKCFFERKMAVHLKYYCGPNAVRTEKQSKQDKKGKKFHCLVLKKSSHDKSSGANGDKLEVAQKKSGKIRRPIRKSKIEPEQPDIDDVKAGVRTSSLHSVKWERVILDEAHCIKDRRSNTARAVLALDSLYKWALSGTPLQNRVGELYSLIRFLQIAPYSYYLCKDCDCRTLDYSSTECKNCIHKSVRHFCWWNKNVATPMQVHGNSGRGQRSMFLLKNKILKGILLRRTKNGRASDLALPPRIVSLRRDTLDIKEKDYYQSLYNESQAQFNTYVNRGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSRTNALRNESIADIDHGEQTCGICHDPVEDPVVTSCSHNFCKSCLIDFSSTLGQPSCPTCSKPLTADFTSNSITGAQRVRTSVNGFRSSSILNRIQLDEFQTSTKIDALREEIRFMIERDGSAKGIIFSQFTSFLDLIMYSLQKSGISCVLLEGSMTITARDSVIKRFHEDPDCRIFLISLKAGGVALNLTVASHVFLMDPWWNPAAERQAMDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSDALAKLTEADLKFLFVT*

Click here to download the sequence:
Link to NCBI Protein BLAST