Transcript Information: R_Transcript_42196.p1


Annotated TAIR IDAT5G54790.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50930.1); Has 53 Blast hits to 53 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:22254195-22255489 | Reverse length=165
E-Value1E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 122.202432038488
Replicate 225.048218040496
Replicate 328.800868907443
Condition 2: 8 Hour
Replicate 114.462411460069
Replicate 220.26863558704
Replicate 316.240914765609
Condition 3: 24 Hour
Replicate 114.633923905379
Replicate 212.381899728043
Replicate 312.927825575302


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42196.p1 GENE.R_Transcript_42196~~R_Transcript_42196.p1 ORF type:complete len:171 (+),score=33.75 R_Transcript_42196:623-1135(+)
ATGGATGACTCTTTGAGCTCCACAAACTACATGACAACATCTCTTTCCTCTAGAACTGGAGACGATAATTCGTCTCAACAGAGTAGTTGGACTCTGTACTTTGCAGACTTGATGATGAAGAATTGTAATGATCAGGAAGACAGTTTCTTTTGTTCTGACAGTAGTGCTTGTTCAGCTACAAGGAAAGACGATAATAGCAGCTGCTATTCGTTGCACAGGTGCCGTGACAAATTGATCTCTAAAAGGAGAAAACTCAACGCAAAAACCTTTGTTGATCAGGACTTGGAGGACACTGCTACTTCACCTGTTCATAGTCCCAAGGTTAATGATTTTAGCTGCTTGTATATGAAGTCAAAAGAGGTTGATGATCAAAGAGATGTTTGCCAGGAAAAAGAGCATGTTTCACAGAAGGTACAAGGCAGCATTGACATGGGGTTTTCAGATACAGAACTAAGAAGAAAGGGTTATTGTTTGGTTCCAATGTCAATGTTATTAAATTATTATGTCAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42196.p1 GENE.R_Transcript_42196~~R_Transcript_42196.p1 ORF type:complete len:171 (+),score=33.75 R_Transcript_42196:623-1135(+)
MDDSLSSTNYMTTSLSSRTGDDNSSQQSSWTLYFADLMMKNCNDQEDSFFCSDSSACSATRKDDNSSCYSLHRCRDKLISKRRKLNAKTFVDQDLEDTATSPVHSPKVNDFSCLYMKSKEVDDQRDVCQEKEHVSQKVQGSIDMGFSDTELRRKGYCLVPMSMLLNYYVN*

Click here to download the sequence:
Link to NCBI Protein BLAST