Transcript Information: R_Transcript_4229.p1


Annotated TAIR IDAT5G38380.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:15345660-15348217 | Forward length=361
E-Value7.1E-181
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.76606244998
Replicate 213.624003921811
Replicate 315.700123520958
Condition 2: 8 Hour
Replicate 113.824884422461
Replicate 216.205358188275
Replicate 317.539758577003
Condition 3: 24 Hour
Replicate 115.606149857035
Replicate 214.001372217052
Replicate 315.677990716738


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_4229.p1 GENE.R_Transcript_4229~~R_Transcript_4229.p1 ORF type:complete len:356 (+),score=56.58 R_Transcript_4229:325-1392(+)
ATGATGTCTCCTAGACCCATTTCCGAGGATCGTCACCCTGTTTATTCCAGGCAAACTCCCCTACGGATCATTCACTTCATCGGCAACTTCATGCGAGTATGGTCAATCTACTCCATGTACCACTATTTGTCTCAGTCTGGATCTTCAGTCGTTCTCTTTATCTTCAGTTGTCTGGTTCCAGCATCCATTGTGTTTTTAGCTTTACAAAAACCTTGGAAAGGGAGACCGCTTTCTAATACCCAGGTTGTACCTTCTATGATAAATGGTGCAATTACAGCATTGTACTTCATCCTGTGGGTGAAAGGGGTCAAATCATGTGGTCCGCTTAGAGCAATTCTTGCTGAGTATTCTGGTGCTGTACTTGGTGTACTGTCTGCTGTTTTGTATGGACGCAGGGGTCATATCTGGAAGAAGGTTGGTGGACTTGTTGCAATGCTGGCATCACTCTACTTTTTATCTCAAGGATGGGCCATGGCTTCTTTTTCTCCTTTCTCATTCAGAGAGAACTCAGATTCTGGTGCACAGTTGGAAAAGGTGCTGGGTATGAAGGAAATGGCAGTACCTGTGTTTGCAGGAATATTATCAGCTTTCAGAAGAGTGATTGCACGGCGTGTTTCACTCAAGAATCAACTGAAAAGGCGCCTCCATGCTATTACCATTGCTTCTGCTACGTGCTTCATGTTTCCAGTTGCTATGTGGGACATGATATTGGGGACCCCTCCTGATAACAGCAAAGAATTGGCCTTTTCGATGTGGCCCTATCTGAGCACCATTCTTTTTGGAGTTATTTTGATATTCTACGTTGAGAATATTGCAGAAGAGAGATTGCACATGGTGTTCTCATCACCTAAACATCTTATGGTAGCTGGAGGTTGTATCATTGTTCTGGAGATTTTGTACAAACTGGACTTCTCTCTAGCAGGATTTGTTTTCTGCTGTGCACTTTTGGGTTTTGGGATATATGAAGCAACTTCTTTGGAACGAGGCAGGCGAGATTCGCATCAAACTTCAGATCTTTCAGAAGGGCCATTAGAAGACCAGATTCAGATGTCATCACTGCCAACTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_4229.p1 GENE.R_Transcript_4229~~R_Transcript_4229.p1 ORF type:complete len:356 (+),score=56.58 R_Transcript_4229:325-1392(+)
MMSPRPISEDRHPVYSRQTPLRIIHFIGNFMRVWSIYSMYHYLSQSGSSVVLFIFSCLVPASIVFLALQKPWKGRPLSNTQVVPSMINGAITALYFILWVKGVKSCGPLRAILAEYSGAVLGVLSAVLYGRRGHIWKKVGGLVAMLASLYFLSQGWAMASFSPFSFRENSDSGAQLEKVLGMKEMAVPVFAGILSAFRRVIARRVSLKNQLKRRLHAITIASATCFMFPVAMWDMILGTPPDNSKELAFSMWPYLSTILFGVILIFYVENIAEERLHMVFSSPKHLMVAGGCIIVLEILYKLDFSLAGFVFCCALLGFGIYEATSLERGRRDSHQTSDLSEGPLEDQIQMSSLPT*

Click here to download the sequence:
Link to NCBI Protein BLAST