Transcript Information: R_Transcript_4230.p2


Annotated TAIR IDAT5G38380.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:15345660-15348217 | Forward length=361
E-Value1.6E-77
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1949763173396
Replicate 20.79732786391005
Replicate 33.3345250931108
Condition 2: 8 Hour
Replicate 12.3246074317005
Replicate 22.2643930978416
Replicate 32.5274394534716
Condition 3: 24 Hour
Replicate 13.7778670121538
Replicate 20.83754147685737
Replicate 32.4935359769883


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_4230.p2 GENE.R_Transcript_4230~~R_Transcript_4230.p2 ORF type:complete len:158 (+),score=10.67 R_Transcript_4230:346-819(+)
ATGATGTCTCCTAGACCCATTTCCGAGGATCGTCACCCTGTTTATTCCAGGCAAACTCCCCTACGGATCATTCACTTCATCGGCAACTTCATGCGAGTATGGTCAATCTACTCCATGTACCACTATTTGTCTCAGTCTGGATCTTCAGTCGTTCTCTTTATCTTCAGTTGTCTGGTTCCAGCATCCATTGTGTTTTTAGCTTTACAAAAACCTTGGAAAGGGAGACCGCTTTCTAATACCCAGGTTGTACCTTCTATGATAAATGGTGCAATTACAGCATTGTACTTCATCCTGTGGGTGAAAGGGGTCAAATCATGTGGTCCGCTTAGAGCAATTCTTGCTGAGTATTCTGGTGCTGTACTTGGTGTACTGTCTGCTGTTTTGTATGGACGCAGGGGTCATATCTGGAAGAAGGTAGCTCGTAATTGCTCACTCTGTTTATTCTCGGCCTTCTTCAACTCCTCCACCACTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_4230.p2 GENE.R_Transcript_4230~~R_Transcript_4230.p2 ORF type:complete len:158 (+),score=10.67 R_Transcript_4230:346-819(+)
MMSPRPISEDRHPVYSRQTPLRIIHFIGNFMRVWSIYSMYHYLSQSGSSVVLFIFSCLVPASIVFLALQKPWKGRPLSNTQVVPSMINGAITALYFILWVKGVKSCGPLRAILAEYSGAVLGVLSAVLYGRRGHIWKKVARNCSLCLFSAFFNSSTT*

Click here to download the sequence:
Link to NCBI Protein BLAST