Transcript Information: R_Transcript_42319.p1


Annotated TAIR IDAT2G38020.1
Annotated Gene Namevacuoleless1 (VCL1)
Annotated Gene Symbol(s)VCL1, MAN, EMB258
Annotation TypeOrtholog
Chromosome Positionchr2:15910098-15914190 | Reverse length=858
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.604701786946
Replicate 215.982999371272
Replicate 317.924657551599
Condition 2: 8 Hour
Replicate 115.368787573271
Replicate 216.202388379015
Replicate 318.623638319735
Condition 3: 24 Hour
Replicate 118.235988719878
Replicate 215.615957536
Replicate 317.74818606999


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42319.p1 GENE.R_Transcript_42319~~R_Transcript_42319.p1 ORF type:complete len:846 (+),score=167.63,Vps16_N|PF04841.9|5.9e-83,Vps16_C|PF04840.8|1.4e-67 R_Transcript_42319:347-2884(+)
ATGGTGGCACCACCAATATCAGTAGCAGCAGAATGGCAGCTCCTCTACAACCGCTACTACCGAAAACCCGAACTCTACTCCATGAAATGGAAGCACATCGATCTTGCCCGCAACAAGCTGGCTTGCGCCCCATTCGGCGGCCCAATCGCCGTCATTCGCGACGATTCAAAGATCGTACAGCTCTACGCTGAATCCGCCCTTCGTAAGCTCCGAATCTTCAACTCCTCAGGCACTCAAATTTCTGAAACTGTCTGGCGTAATCCTGGCGGTCGATTGATCGGTATGTCCTGGACTGAGGACCAAACCCTAATTTGCATTGTTCAGGATGGGACTATTTATAGGTATAATATTCATGCTGAGTTGATTGATGGTGACTCTAGTGTTACGTTAGGGAAGGAGTGTTTTGAGCACAGTGTTGTGGATTGTGTGTTTTGGGGGAATGGTGTTGTTTGTATGAATGAAGGGTTTCAGTTCTTTTGTGTTCCTGATTTTAAGAATTTAGGGAAGAATAGTGTGGTCAAGTTGGCTGATGTTGGGATTGAGGATCAGCCCTTGTGTATGACCGTGATCGAGCCGAAGTATACCATGTCCGGAAATGTGGAGCTCTTGGTTGCTGTTGAGGACCATGTGCTGTTGGTGGATGAGGATGGGGTTCAGCAGGTCGGGGCCGGAGTCGGGCCACTTCAGAAGATGGTTGTTTCCAAGGATGGGAGGTTTTTGGCTTCGTTTACTCATGATGGGAGGCTCTTGGTTATTACTTCTGATTTCACCAACATCATTTTCGAGTATAGTTGCGAGTCTGCTCTTCCTCCAGAACAACTGGCTTGGTGTGGACTTGACAGTGTACTACTGTATTGGGATGATGTGCTTATGATGGTGGGTCCCTATGGAGATCCAGTGCACTACTTCTATGATGAACCAATAGTTTTTATATCCGAGTCCGATGGTGTTAGGATCCTTTCCAACACAAGCATGGAGTTTCTGCAGAGAGTTCCTGATTCCACAGTGTCTATCTTTAAAATAGGAAGCGCAACACCTGCTGCTTTGCTCTACGATGCTTTGGATCATTTTGATCGACGAAGTGCCAAGGCTGATGAGAATTTAAGAATGATTCGGTCCTCGTTGCCAGAGGCAATTGAAGCATGTGTTGATGCTGCAGGTTATGAATTTGATATTTCGCGCCAGAGAACACTACTGAGAGCTGCAAGCTATGGTCAAGCATTTTGCAGCAATGTTCCTCGTGATCGTTTCCAAGAGATGTGCAAAACCTTGCGTGCCTTAAATGCTGTGCGGAGCCCTGAAATTGGAATTCCCCTTAGTATACAGCAATATAAGGAGCTAACAGCACCGGTTCTAATTTCTCGTTTGATCAATGCGCACCATCACCTTCTGGCACTGAGGTTGTCTGAGTATCTTGGCTTGAACCAGGAGCTGGTCATAATGCATTGGGCATGTACGAAGATAACGGCTTCTCTAGCAATGCCTGATGCTGCTCTCCTCAGTATTCTACTTGACAAGTTGAGACTATGCAAAGGCATAGACTACGCGAGAGTTGCTGAGCACGCTGATAAGAGTGGCCGTAGGAAGCTGGCTGCTACCCTCGTTGAACATGAGCCCTGCTCTTCTAAACAGATTCCACTTCTTTTGAGCATAGGAGAAGAAGAGACGGCTTTGTCAAAGGCAACTGAAAGTGGTGATACTGATCTGGTGTACTTTGTCCTGTTCCATGTATGGCAGAAGAGGCCATCTTTGGAATTCTTTGGGATGATTCAAGCTAAATCTTTGGCTAGGGATTTGTTTATAGCTTATTCACGGTGTTATAACCATGAATTTCTAAAGGACTTCTTTTTGTCAGCTGGACAACTACAGGAAGTTGCTTTTCTTTTGTGGAAGGAGTCCTGGGACTACAGTAAGAATCTGATGGCTAGTAAGGGTACTCCGCTTCATGGACCTCGCATAAAACTTATTGAGAAGGCCCGAGATCTCTTTGCTGAAACAAAGGAACATAATTTTGAGTCAAAAGCTGCTGAAGAGCACGCAAAATTGTTAAGAATCCAACATGAATTGGAAGTGTCCACGAAGCAGGCTATCTTTGTAGATTCAAGCATCAGTGACACAATCCGGACATGCATTGTACTAGGAAATCATCGAGCTGCTATGAAGGTGAAGTCAGAGTTCAAGGTTTCTGAGAAAAGGTGGTATTGGCTTAAAGTTTTTGCATTGGCTACAATAAGAGATTGGGATGCCCTGGAGAAGTTTTCAAAGGAGAAGAGACCGCCAATAGGTTATAAACCCTTTGTGGAGGCTTGCATTGATGCTGATGACAAAGGTGAAGCTCTGAAATATATACCAAAACTTGCTGATCCTCGTGAAAGAGCTGAGGCCTATGCTAGGATTGGAATGGCAAAGGAAGCTGCAGATGCAGCGAGCCAGGCAAAAGATAGTGAGCTCCTTGGTCGGTTGAAGTTGAGTTTTTCCCAAAACGCTGCAGCTACTTCGATTTTTGACACCATTCGTGAGAGACTGGGCGTTTCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42319.p1 GENE.R_Transcript_42319~~R_Transcript_42319.p1 ORF type:complete len:846 (+),score=167.63,Vps16_N|PF04841.9|5.9e-83,Vps16_C|PF04840.8|1.4e-67 R_Transcript_42319:347-2884(+)
MVAPPISVAAEWQLLYNRYYRKPELYSMKWKHIDLARNKLACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSSGTQISETVWRNPGGRLIGMSWTEDQTLICIVQDGTIYRYNIHAELIDGDSSVTLGKECFEHSVVDCVFWGNGVVCMNEGFQFFCVPDFKNLGKNSVVKLADVGIEDQPLCMTVIEPKYTMSGNVELLVAVEDHVLLVDEDGVQQVGAGVGPLQKMVVSKDGRFLASFTHDGRLLVITSDFTNIIFEYSCESALPPEQLAWCGLDSVLLYWDDVLMMVGPYGDPVHYFYDEPIVFISESDGVRILSNTSMEFLQRVPDSTVSIFKIGSATPAALLYDALDHFDRRSAKADENLRMIRSSLPEAIEACVDAAGYEFDISRQRTLLRAASYGQAFCSNVPRDRFQEMCKTLRALNAVRSPEIGIPLSIQQYKELTAPVLISRLINAHHHLLALRLSEYLGLNQELVIMHWACTKITASLAMPDAALLSILLDKLRLCKGIDYARVAEHADKSGRRKLAATLVEHEPCSSKQIPLLLSIGEEETALSKATESGDTDLVYFVLFHVWQKRPSLEFFGMIQAKSLARDLFIAYSRCYNHEFLKDFFLSAGQLQEVAFLLWKESWDYSKNLMASKGTPLHGPRIKLIEKARDLFAETKEHNFESKAAEEHAKLLRIQHELEVSTKQAIFVDSSISDTIRTCIVLGNHRAAMKVKSEFKVSEKRWYWLKVFALATIRDWDALEKFSKEKRPPIGYKPFVEACIDADDKGEALKYIPKLADPRERAEAYARIGMAKEAADAASQAKDSELLGRLKLSFSQNAAATSIFDTIRERLGVS*

Click here to download the sequence:
Link to NCBI Protein BLAST