Transcript Information: R_Transcript_42346.p1


Annotated TAIR IDAT2G20190.1
Annotated Gene NameCLIP-associated protein
Annotated Gene Symbol(s)ATCLASP, CLASP
Annotation TypeOrtholog
Chromosome Positionchr2:8711862-8718813 | Reverse length=1439
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 124.892696405744
Replicate 215.972289389992
Replicate 320.863190466205
Condition 2: 8 Hour
Replicate 118.13579623686
Replicate 219.360874180612
Replicate 324.076617683196
Condition 3: 24 Hour
Replicate 123.386479976769
Replicate 217.189679647082
Replicate 323.174326331701


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42346.p1 GENE.R_Transcript_42346~~R_Transcript_42346.p1 ORF type:complete len:1446 (+),score=305.14,CLASP_N|PF12348.4|1.1e-05,CLASP_N|PF12348.4|2e-55,CLASP_N|PF12348.4|6.2e-14,CLASP_N|PF12348.4|0.015,CLASP_N|PF12348.4|3.6e+02,HEAT_2|PF13646.2|2.7,HEAT_2|PF13646.2|0.0015,HEAT_2|PF13646.2|32,HEAT_2|PF13646.2|0.04,HEAT_2|PF13646.2|0.0011,HEAT_2|PF13646.2|14,HEAT_2|PF13646.2|1.1,HEAT_2|PF13646.2|0.98,HEAT_2|PF13646.2|2,HEAT_2|PF13646.2|2.5,HEAT|PF02985.18|1.1e+04,HEAT|PF02985.18|6.2e+03,HEAT|PF02985.18|63,HEAT|PF02985.18|9.7e+02,HEAT|PF02985.18|6.8e-06,HEAT|PF02985.18|1.4e+04,HEAT|PF02985.18|8.7e+03,HEAT|PF02985.18|2.6e+03,HEAT|PF02985.18|3.2e+02,HEAT|PF02985.18|3.6e+03,HEAT|PF02985.18|0.085,HEAT|PF02985.18|1.6e+02,HEAT|PF02985.18|1.5e+04,HEAT|PF02985.18|1.2e+02,HEAT|PF02985.18|2.1,HEAT|PF02985.18|1.6e+04,HEAT|PF02985.18|0.49,Vac14_Fab1_bd|PF12755.3|0.79,Vac14_Fab1_bd|PF12755.3|15,Vac14_Fab1_bd|PF12755.3|4.8e+03,Vac14_Fab1_bd|PF12755.3|2.1e+03,Vac14_Fab1_bd|PF12755.3|36,Vac14_Fab1_bd|PF12755.3|0.0051,Vac14_Fab1_bd|PF12755.3|7.3e+02,HEAT_EZ|PF13513.2|0.51,HEAT_EZ|PF13513.2|0.0053,HEAT_EZ|PF13513.2|1.4e+02,HEAT_EZ|PF13513.2|1.2e+04,HEAT_EZ|PF13513.2|25,HEAT_EZ|PF13513.2|8e+03,HEAT_EZ|PF13513.2|5.4e+03,HEAT_EZ|PF13513.2|1.7e+02,HEAT_EZ|PF13513.2|2e+02,Adaptin_N|PF01602.16|1.4e+03,Adaptin_N|PF01602.16|0.3,Adaptin_N|PF01602.16|8e+02,Adaptin_N|PF01602.16|0.0089,Adaptin_N|PF01602.16|0.1,Cnd1|PF12717.3|14,Cnd1|PF12717.3|1.5e+03,Cnd1|PF12717.3|5.4e+03,Cnd1|PF12717.3|1.6e+02,Cnd1|PF12717.3|21,Cnd1|PF12717.3|2.8e+02,Cnd1|PF12717.3|0.29,Cnd1|PF12717.3|8.7e+02,DUF2454|PF10521.5|2.9e+03,DUF2454|PF10521.5|2.8e+02,DUF2454|PF10521.5|0.14,DUF2454|PF10521.5|3e+02,DUF2454|PF10521.5|0.09 R_Transcript_42346:812-5149(+)
ATGGAGGAGGCGCTAGAGCTAGCCCGGGCGAAGGACACCAAGGAGCGAATGGCGGGGGTAGAGCGTCTCCACCAGCTTCTAGAAGCTTCTCGAAAATCGCTATCATCTTCCGAAGTCACGTCCTTAGTTGATACTTGCTTAGATCTCCTCAAGGACAACAACTTCCGAGTCTCTCAAGGCGGTCTCCAAGCTCTCGCCTCTGCTGCGGTGCTTTCCGGTGACCACCTCAAAATTCATTTCAATGCTCTCGTTCCTGCCGCCGTTGAGCGTCTCGGTGACGCTAAGCAGCCTGTTCGTGACGCCGCTCGCCGCCTCTTGCTCACTCTCATGGAGGTTTCATCTCCAACGATTATCGTTGAAAGAGCAGGTTCTTATGCATGGGAGCACAAAAGCTGGAGAGTTCGGGAAGAATTCGCCCGCACAGTAACATCAGCGATCAATTTGTTTGCAGCTACAGAGCTTACTCTTCAGAGAGCTATTCTTCCTCCTATATTGCATATGTTGAATGACCCAAACCACAGTGTTAGAGAAGCTGCAATATCATGCATTGAGGAGATGTATACTCAGGTTGGACCTCAATTTCAAGAGGAGCTTCAAAGGCACCAGCTTCCATCATATATGGTGAAGGATATAAATGCCAGGTTGGAGAGGATTGAACCAAAGCCAAGGTCCTCAGATGGACCTCCTAGCATAAGTGCTGCTAGTGAACCTAAGTTCACAAATATTAATCCTAAAAGAAGCAGTCCTAAAGCCAAGAATTCTTCACGCGAAACATCTCTTTTTGGAGCAGCAGATGGGGATGTTACAGAAAAGCCTGTTGATCCTATTAAAGTGTACTCAGAGAAGGAGCTTGTAAGAGAATTTGAGAAGATAGCTTCGACATTAGTTCCTGAAAAGGATTGGTCTCATCGCATTGCCGCCATGCAGAGAATTGAAGGCCTCATTGTTGGAGGTGCTACTGATTACCCGTGCTTCCGTGGACTGCTAAAGCAGCTTATTGGTCCTTTGAGTACACAACTATCTGATCGTAGGTCAAGCATAGTTAAACAAGCTTGCCATTTGCTAAATTTCTTGTCGAAGGAGCTGTTGGGGGACTTTGAGGCTTGTGCAGAACAGTTTATCCCTGTACTATTTAAGCTTGTTGTGATAACTGTACTTGTAATTGCAGAGTCTGCAGATAATTGCATTAAGACGATGCTGCGTAACTGCAAAGTTGCCCGTGTGCTTCCTCGAATAGCAGATTGTGCAAAGAATGACAGAAATGCTGTGCTGCGTGCAAGGTGCTGTGATTATGCACTTCTAATACTAGAGCAGTGGCCTGATGCACCTGAAATACAGCGATCAGCTGATCTTTATGAGGATCTTATCAGATGTTGTGTGGGAGATGCAGTGAGTGAGGTTCGGACAACTGCTAGGGCTTGCTATCGACTTTTTGCGAAAACCTGGCCAGAACGTTCTAGGAGACTATTCCAATCTTTTGATCCTGTTATACAAAGGATACTAAATGAAGAAGATGGGGGTTTACATCGAAGACATGCTTCGCCTTCTGTTCGTGAAAGAAATGTCCCAATTACACCCCAATCATCTGCTTCTTTAAATGTTCCTGGGTATGGAACTTCTGCTATTGTTGCAATGGACAAGAGTGCAACCTTAGCCTCAAGGACATCAGTTTCTTCTGGGATGCTATTGTCTCAATCAAAGTCAATTGATAAGGGATCTGAACGCAGCTTGGAAAGTGTACTGCATTCCAGCAAAGAGAAAGTTTCAGCAATCGAAAGCTTGCTCAGAGGTTTAGATATGTCATCAAAACACAACTCATCCGGTCTTCGGTCATCCAGCCTTGATCTAGGAGTTGACCCTCCATCTTCTCGTGATCCACCATTTCCGCTTGCTGTTCCTGCATCAAATCAAGTCACAAGCTTATCGTTGGATTCAAAATTGTCATCTGCCAATGAAAGTAGCAAACGCAATGGTGGCTTAGGTCTTTCTGAAATCTATTCTCAGATTCATGGTTCTAAAGATGCTGGTAAACTATCTTATTGTAGTGGTCTCACAAATGAGTCATCATCAGCTCTGACTTCATACTCAGCCAAAAGAGCTTCTGAAAGGGTACCGGAAAGAGGCTTGAATGAAGAGCAGGTTGAATTTAGGGACTCTAGAAGATACATGCACACACACGTGGATAGACAGTATCTAGATACTCCCTACAGAGAATCAAGCTTTAGGGATTCTCATGTTGGTTATGTTCCAAACTTTCAGAGACCACTATCAAGAAAGAATGTCACTGGTAGAAGCACGTCTTCTAGTAGGAGGAGGAGTTTCGATGATAGCCATTTGCCGCTAGGGGAGTCACCAAGCTATGGGGATGGTCCAGCATCTCTTCATGATGCTCTAAGTGAAGGGTTAAGTTCAAGTTCTGACTGGTGTGCTAGAGTTTCTGCTTTTAATTATATTCGTTCTCTTCTACAGCAAGGTCCAAGTGGTGCTCAGGAAGTCGTCCAGAATTTTGAAAAGGTGATGAAGCTCTTTTTTAAGCACTTGGATGATCCCCATCATAAAGTTGCCCAGGCAGCTCTTTTAACTCTTGCTGAGATAATTCCTTCTTGTCGAAAGCCCTTCGAGAGCTACATGGAAAGGATCTTGCCCCATGTATTCTCTAGGTTGATTGATCCAAAAGAGTTGGTTAGGCAGCCTTGCTCAACAACATTAGATATTGTGAGTAAAACCTATGGAGTGGATGCTTTGTTGCCTGCTTTGCTTCGGTCACTGGATGAACAGCGGTCACCCAAAGCAAAATTGGCTGTTATTGAATTTGCAATCACTTCTTTGAACAAGCATTCAATTAGTCCTGAAGGTGCTGGTAATATTGGCATATTGAAGTTATGGCTCGCAAAACTGACACCATTGGTTCATGATAAGAATACGAAACTTAAGGAAGCTGCTATTTCATGTTTTATATCAGTTTACACCCATTACGATCCAACGAATGTGCTGAATTTTATCCTTAGTTTATCTGTTGAAGAACAGAATTCCTTGCGACGAGCACTAAAGCAATACACGCCTCGTATCGAAGTGGACCTGATGAACTTTGTGCAGAGCAAGAAAGAGAGACAACGTTCTAAATCTTCTTATGATCCATCTGATGTTGTAGGAACATCATCTGATGATGGTTATATGGGAGTGTCAAAGAAAACTCATTTTGTCGGAAGATACTCTGGCAGTTCCCTTGAAAGTGATGGAGGCAGGAAATGGAATTCAATGCTGGAATCAACACATGTCAGCAGCCGTACCAATCAAGCTGGAAGTGACGAAACTCATGAACATCATTATAACGGTCTAGACACTGGATCAAGTAGTGATTTATTCAGTTCTAGAATCCAAGATATGAAGTATTTAGGAAATAACACTGGTGAAAGTCTGGGATCCTGGACTAGCCGATTGGAAAATGTGGACAGTAAAGAAAATTTAGGGCTTTCATCTACCCCCCGTTTGGATTATAATGAACTTAGGAGTTCTGATTCTCTTGGAGTAAGTACAGACTTCCAGCCTGAAAATGGTGTTCCAGATGAGGCCATTGCAGATCATTCAAAAGCTGGAGCCTTGAAGATAATTTCTGCTTCAGAAACTGGCCCAAGCATTCCACAGATTATCCACCTGATTTGTAATGGAAATGAAGGAAGCTCTAATGACAGCAAGCGAAATGCAGTTCAGCAATTAATTGAAGCATCAATTTCTAATGATCCCTCCATATGGTCTAAGTACTTCAATCAGATTTTAACAGCTGTACTTGAGGTGTTAGATGACTCTGATTCTTCAATTAGAGAACTGGTGCTATCGCTTATTGCTGAAATGCTGAAACATCAGAAAGATGCCATGGAGGATTCTGTTGAAATTGTTATTGAAAAGCTGCTTCATGTTTCCAAGGATGCTGTTCCGAAGGTTGCAAATGAAGCGGAAAACTGCTTGACTATGTTGTTGTCCCAGTATGATCCATTTAGATGCTTGAGTGTAATCGTTCCTCTGTTAGTTACTGAGGATGAGAAGACCCTTGTTACTTGCATAAATTGCTTGACTAAGCTTGTGGGTAGGTTGTCGCAAGAGGAATTGATGGGACAATTGCCCTCTTTCCTGCCAGCTCTTTTTGACGCATTTGGGAATCAAAGTGCTGATGTTCGCAAGACTGTTGTGTTCTGTCTAGTGGACATATATATCATGCTCGGGAAGGCTTTCTTGCCATATTTGGAGGGACTTAACAGCACACAATTACGATTGGTTACAATTTATGCGAACCGGATCTCTCAAGCTAGAACGGGAGCGCCAATAGACGCTGGCCAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42346.p1 GENE.R_Transcript_42346~~R_Transcript_42346.p1 ORF type:complete len:1446 (+),score=305.14,CLASP_N|PF12348.4|1.1e-05,CLASP_N|PF12348.4|2e-55,CLASP_N|PF12348.4|6.2e-14,CLASP_N|PF12348.4|0.015,CLASP_N|PF12348.4|3.6e+02,HEAT_2|PF13646.2|2.7,HEAT_2|PF13646.2|0.0015,HEAT_2|PF13646.2|32,HEAT_2|PF13646.2|0.04,HEAT_2|PF13646.2|0.0011,HEAT_2|PF13646.2|14,HEAT_2|PF13646.2|1.1,HEAT_2|PF13646.2|0.98,HEAT_2|PF13646.2|2,HEAT_2|PF13646.2|2.5,HEAT|PF02985.18|1.1e+04,HEAT|PF02985.18|6.2e+03,HEAT|PF02985.18|63,HEAT|PF02985.18|9.7e+02,HEAT|PF02985.18|6.8e-06,HEAT|PF02985.18|1.4e+04,HEAT|PF02985.18|8.7e+03,HEAT|PF02985.18|2.6e+03,HEAT|PF02985.18|3.2e+02,HEAT|PF02985.18|3.6e+03,HEAT|PF02985.18|0.085,HEAT|PF02985.18|1.6e+02,HEAT|PF02985.18|1.5e+04,HEAT|PF02985.18|1.2e+02,HEAT|PF02985.18|2.1,HEAT|PF02985.18|1.6e+04,HEAT|PF02985.18|0.49,Vac14_Fab1_bd|PF12755.3|0.79,Vac14_Fab1_bd|PF12755.3|15,Vac14_Fab1_bd|PF12755.3|4.8e+03,Vac14_Fab1_bd|PF12755.3|2.1e+03,Vac14_Fab1_bd|PF12755.3|36,Vac14_Fab1_bd|PF12755.3|0.0051,Vac14_Fab1_bd|PF12755.3|7.3e+02,HEAT_EZ|PF13513.2|0.51,HEAT_EZ|PF13513.2|0.0053,HEAT_EZ|PF13513.2|1.4e+02,HEAT_EZ|PF13513.2|1.2e+04,HEAT_EZ|PF13513.2|25,HEAT_EZ|PF13513.2|8e+03,HEAT_EZ|PF13513.2|5.4e+03,HEAT_EZ|PF13513.2|1.7e+02,HEAT_EZ|PF13513.2|2e+02,Adaptin_N|PF01602.16|1.4e+03,Adaptin_N|PF01602.16|0.3,Adaptin_N|PF01602.16|8e+02,Adaptin_N|PF01602.16|0.0089,Adaptin_N|PF01602.16|0.1,Cnd1|PF12717.3|14,Cnd1|PF12717.3|1.5e+03,Cnd1|PF12717.3|5.4e+03,Cnd1|PF12717.3|1.6e+02,Cnd1|PF12717.3|21,Cnd1|PF12717.3|2.8e+02,Cnd1|PF12717.3|0.29,Cnd1|PF12717.3|8.7e+02,DUF2454|PF10521.5|2.9e+03,DUF2454|PF10521.5|2.8e+02,DUF2454|PF10521.5|0.14,DUF2454|PF10521.5|3e+02,DUF2454|PF10521.5|0.09 R_Transcript_42346:812-5149(+)
MEEALELARAKDTKERMAGVERLHQLLEASRKSLSSSEVTSLVDTCLDLLKDNNFRVSQGGLQALASAAVLSGDHLKIHFNALVPAAVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWEHKSWRVREEFARTVTSAINLFAATELTLQRAILPPILHMLNDPNHSVREAAISCIEEMYTQVGPQFQEELQRHQLPSYMVKDINARLERIEPKPRSSDGPPSISAASEPKFTNINPKRSSPKAKNSSRETSLFGAADGDVTEKPVDPIKVYSEKELVREFEKIASTLVPEKDWSHRIAAMQRIEGLIVGGATDYPCFRGLLKQLIGPLSTQLSDRRSSIVKQACHLLNFLSKELLGDFEACAEQFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRNAVLRARCCDYALLILEQWPDAPEIQRSADLYEDLIRCCVGDAVSEVRTTARACYRLFAKTWPERSRRLFQSFDPVIQRILNEEDGGLHRRHASPSVRERNVPITPQSSASLNVPGYGTSAIVAMDKSATLASRTSVSSGMLLSQSKSIDKGSERSLESVLHSSKEKVSAIESLLRGLDMSSKHNSSGLRSSSLDLGVDPPSSRDPPFPLAVPASNQVTSLSLDSKLSSANESSKRNGGLGLSEIYSQIHGSKDAGKLSYCSGLTNESSSALTSYSAKRASERVPERGLNEEQVEFRDSRRYMHTHVDRQYLDTPYRESSFRDSHVGYVPNFQRPLSRKNVTGRSTSSSRRRSFDDSHLPLGESPSYGDGPASLHDALSEGLSSSSDWCARVSAFNYIRSLLQQGPSGAQEVVQNFEKVMKLFFKHLDDPHHKVAQAALLTLAEIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYGVDALLPALLRSLDEQRSPKAKLAVIEFAITSLNKHSISPEGAGNIGILKLWLAKLTPLVHDKNTKLKEAAISCFISVYTHYDPTNVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNFVQSKKERQRSKSSYDPSDVVGTSSDDGYMGVSKKTHFVGRYSGSSLESDGGRKWNSMLESTHVSSRTNQAGSDETHEHHYNGLDTGSSSDLFSSRIQDMKYLGNNTGESLGSWTSRLENVDSKENLGLSSTPRLDYNELRSSDSLGVSTDFQPENGVPDEAIADHSKAGALKIISASETGPSIPQIIHLICNGNEGSSNDSKRNAVQQLIEASISNDPSIWSKYFNQILTAVLEVLDDSDSSIRELVLSLIAEMLKHQKDAMEDSVEIVIEKLLHVSKDAVPKVANEAENCLTMLLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMGQLPSFLPALFDAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLEGLNSTQLRLVTIYANRISQARTGAPIDAGQ*

Click here to download the sequence:
Link to NCBI Protein BLAST