Transcript Information: R_Transcript_423974.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value8E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.51210488820239
Replicate 30
Condition 2: 8 Hour
Replicate 10.29860810911275
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_423974.p1 GENE.R_Transcript_423974~~R_Transcript_423974.p1 ORF type:internal len:82 (+),score=12.22 R_Transcript_423974:1-243(+)
TTTCTTTCTTTCTCACGATCCTTCTTCACAATAGCCTTCTTTTTCTTTGCTTCCACTTTTATCATGGTTGATGGCAACACTAAAACTCCTCCTGCCTTTACTATCTCTAACATCAAGACATACATCCCACTTTCCTTGTATTTCTGTCAACCTAATTATGAGACCTGGAAGGAACTTTTTGAAACTCATTTTACTAGCTTTGATGCTTTGGGTCATCTTGATGGCATAAAAACAACATTCTCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_423974.p1 GENE.R_Transcript_423974~~R_Transcript_423974.p1 ORF type:internal len:82 (+),score=12.22 R_Transcript_423974:1-243(+)
FLSFSRSFFTIAFFFFASTFIMVDGNTKTPPAFTISNIKTYIPLSLYFCQPNYETWKELFETHFTSFDALGHLDGIKTTFS

Click here to download the sequence:
Link to NCBI Protein BLAST