Transcript Information: R_Transcript_42401.p1


Annotated TAIR IDAT1G58100.1
Annotated Gene NameTCP family transcription factor
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:21512680-21513885 | Reverse length=401
E-Value9.2E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.351105715996
Replicate 25.1192393241151
Replicate 38.4989662459223
Condition 2: 8 Hour
Replicate 15.7970068956376
Replicate 26.4791247737711
Replicate 36.8629764536445
Condition 3: 24 Hour
Replicate 110.708235173346
Replicate 26.624371044873
Replicate 38.8942969575731


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42401.p1 GENE.R_Transcript_42401~~R_Transcript_42401.p1 ORF type:3prime_partial len:283 (+),score=75.36,TCP|PF03634.9|4.9e+03,TCP|PF03634.9|6.4e-34 R_Transcript_42401:191-1036(+)
ATGGATGACAACAGAAACCCAGAAGAAAAACACCACACCCTACTTGTAACTTCCACCAACAACACAACCAGCAACAACACTTCAGATGAAAACACCAACAACCAAAACCAACAACAAAAAAAGCAGCAGCAACAACAACAACAATTAGCACCAAAAAGAAGTTCCAACAAAGACAGACACACAAAGGTTGATGGGAGAAGCAGAAGAATAAGAATGCCAGCCCTATGTGCAGCAAGAGTATTCCAACTAACAAGAGAATTGGGTCATAAAACTGATGGTGAAACCATTCAATGGCTTCTTCAACAAGCTGAACCTGCTATTATTACTGCTACTGGTACTGGCACTATTCCTGCTTCTTTTCTAACAGCCTCTGGTTCCTCTGCTTCTCAACAGGGGAACTCTGTTTCTCTAGGTTTACACTCCAAAATCGCTTCCAATACTAATAATTGGGGTCATTTTGGGGATAATTTAGGGAGATCTCAAGTTGGTGCTGCTGCATCTATTTGGCCTTATGCTCAGGTTTTTGATAATTCCACTTCTTCTTCTGGTGCTAATAATACACCCAATTTAGGGGGTGTTCAAAATTCAAACTTTATGACAAATTTCTCCTTACAAGGTGTGGGTTTGCCTACTGCTAATATGGGTCTTCTTAGTTTTACCCCTATTTTGACTAGAGCTGCTGATGGGGCTCAGATTCCTGCTGGTCTTCAATTGGGTTTATCTCAAGAAGGTCATGGTGTTATTGGTCAAATCTACCATCAACAACAACAACAACAGCAACAGCAGCAACAAGGGCAAGACCTAAATAATGATAATACTAATGGTGGTGGTGAAAGTGCTGAGCCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42401.p1 GENE.R_Transcript_42401~~R_Transcript_42401.p1 ORF type:3prime_partial len:283 (+),score=75.36,TCP|PF03634.9|4.9e+03,TCP|PF03634.9|6.4e-34 R_Transcript_42401:191-1036(+)
MDDNRNPEEKHHTLLVTSTNNTTSNNTSDENTNNQNQQQKKQQQQQQQLAPKRSSNKDRHTKVDGRSRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPAIITATGTGTIPASFLTASGSSASQQGNSVSLGLHSKIASNTNNWGHFGDNLGRSQVGAAASIWPYAQVFDNSTSSSGANNTPNLGGVQNSNFMTNFSLQGVGLPTANMGLLSFTPILTRAADGAQIPAGLQLGLSQEGHGVIGQIYHQQQQQQQQQQQGQDLNNDNTNGGGESAEP

Click here to download the sequence:
Link to NCBI Protein BLAST