Transcript Information: R_Transcript_42414.p1


Annotated TAIR IDAT1G62830.1
Annotated Gene NameLSD1-like 1
Annotated Gene Symbol(s)LDL1, SWP1, ATSWP1, ATLSD1, LSD1
Annotation TypeOrtholog
Chromosome Positionchr1:23264638-23267172 | Reverse length=844
E-Value1.3E-302
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.1888920449892
Replicate 23.4333573007783
Replicate 34.754228557692
Condition 2: 8 Hour
Replicate 13.7267794448008
Replicate 23.1783391799421
Replicate 35.7765502980603
Condition 3: 24 Hour
Replicate 17.5370914294727
Replicate 26.7691612192464
Replicate 37.4610917863512


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42414.p1 GENE.R_Transcript_42414~~R_Transcript_42414.p1 ORF type:complete len:795 (+),score=124.10,Amino_oxidase|PF01593.20|1.3e+02,Amino_oxidase|PF01593.20|4.1e-97,NAD_binding_8|PF13450.2|1.5e-11,SWIRM|PF04433.13|3.1e-08,Thi4|PF01946.13|3.1e-06,Pyr_redox_2|PF07992.10|3.9e-06,FAD_binding_2|PF00890.20|7.3e-06,FAD_binding_2|PF00890.20|5.2e+03 R_Transcript_42414:79-2463(+)
ATGGACCCAAACACCGCCACCACTACCACCACCGCAAACTCCCCTTCTCCTCCTCCTCCCTCCACCACCACCGCAACCAACCCCAACGGCAATGCAACTTCCGACGACGTCTCCACCCCTTCAAACCCCCTATCACCACCTCCACCCGAACCCGACGACGAAACCACCACAACCACAACCGCCTCGGACCTCCCCATCCCAAAACGCCGCCGCAAACGCAAACACTACCCAGGCATGATCTCCTCAATGGTCCTCCGCCCTCACTCCTCCCGCACCTCCTCTCTCCTCCACCTCACCGATACCATCTCTCTCCCTCACCGCCGTCGCCGCCGCCGCATCTCCCCTTCCCAACCCCCTTCCCTCGACGTCGACTCCCTCATTGCCCTCTCCGTCGGCTTCCCCCTCGACTCCCTCACCGAAGAAGAAATCGAATACGGCGTCGTCTCATCTCTGTCCTCCTCATCCCAAGACCACTCCCTCTACATCTCCGCCCGTAACCACCTCCTCTCCAGGTGGCGCTCTGACGTCACCTCCCCCGTCACCCTCCCTTCTCTCTCCCCCTCCCCTCACCTCTCCATGGCCCACTCCTTCCTCCTCCACCACGGCTACATCAACTTCTGCCTTTCCACCCCTCCTCCCTCCCCTCTGACGTCATCCCCCAACGTCATCATCATCGGGGCAGGCCTGGCAGGCCTCACCGCGGCCCGCCAGCTCACCCACATGGGCTTCAAGGTCGTCATCCTAGAAGGCCGAGCCCGGCCCGGCGGTCGCGTCAAAACCAAAAAAATGCAAGGAAACGGCGTCGTCGGGGCCGCCGATTTAGGTGGCAGCGTTTTAACCGGCATCAACGGAAACCCTCTAGGTGTTCTAGCAAGACAATTAGGGTTTCCACTCCATAAGGTAAGAGACATCTGCCCGCTTTATTTACCCGACGGGAAGTCCATCGACAAGGAAGTTGATTCGAGGGTGGAGGCTGCTTTTAATAAGCTCCTTGATAGGGTTTGTAAGCTCAGGCAAGTTATGATGGAGGAACTGAATTGTGTTGATGTTTCGCTAGGGACGGCTCTCGAGGCGTTTAGGAAGGTTTTCAATGTGGCTGATGATGCTCAGGAGAAGATGTTGTTGAATTGGCATTTGGCGAATTTGGAGTATGCCAATGCTTCGTTGCTATCGAGTTTGTCGATGGCATATTGGGATCAGGATGATCCTTACGAGATGGGTGGAGACCATTGCTTCATTCCTGGCGGCAATGAGAGGTTTATTCGGGCATTGGCTGAGGGGTTGCCAATTTTTTATGAGAGGAGGGTGGAGAGTGTCAGGTATGGGGTTGAGGGGGTGGTGGTTTATGCTAATGGCCAGGAGTTTAGGGCTGACATGGCGCTTTGTACGGTTCCGTTGGGGGTGTTGAAGCGTGGGGAGATTGAGTTTTTGCCTCCCCTTCCGGAGAGGAAGAAGGAGGCTATTGATAGGCTTGGGTTCGGATTGTTGAACAAGGTGGCCATGCTGTTTCCGTATAATTTTTGGGGTGGGGATTTGGACACGTTTGGGCATTTGTCCGAGGACCCTAAGAGGAGGGGGGAGTTCTTCTTGTTTTATAGTTACTCATCGGTGTCTGGTGGGCCCCTCCTTGTGGCTCTTGTGGCCGGGGAGGCAGCTATTGAGTTTGAGAAGGTGTCCCCTGTGGAGATGGTTGAGAGGGTTATGGATATCTTGAGGGGGATTTTTTATCCCAAAGGGGTGGATGTTCCGGACCCTGTTCAGGCTGTTTGTACCCGGTGGGGGCAGGACCGGTTCTCGTATGGCTCGTACTCTTATGTTGCCATTGGGGCGTCGGGGGATGATTATGATATTCTGGCTGAGAGTATTGGCTGTGGGAGGGTGTTCTTCGCCGGTGAGGCAACCAACAGGCAGTATCCTGCGACTATGCATGGTGCTTACCTGAGTGGGATGAGGGAGGCCGCTAATATTCTCAAGGCCGCCAAGAGGAGGTCATTGTTCCCGAAAGTTGATGATGGTAATGCGGAGAATGCTGGTTCGAAGGAGAGTCATGATGATTTGAGTCGGTTGTTTGTCAAACCTGATCTTAAAGTAGGGAACTTGTGTGTTCTGTTTGATCCGAGATCAGATAACCCTGAAGCTCACTCGTTATTGAGAGTTCTGTTTCGCGGGGAGAAGTTGGAGACGGGTGCCCTGCATTTGTATGGCCTGCTGAAACGTAGACAGGCTGTTGAGCTGAGCAAAGTTGATGGTGATGTCAATAGGTTGAAAATGCTGAATCAAATGTTTGGAGTGCGGTTAGTTGGAAGGAAAGGATTATGTTCGGATGCAGAATCACTAGTCGCAGCTCTTTGTAGCAAAGCATGTTCTAAAGAAGATGGATCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42414.p1 GENE.R_Transcript_42414~~R_Transcript_42414.p1 ORF type:complete len:795 (+),score=124.10,Amino_oxidase|PF01593.20|1.3e+02,Amino_oxidase|PF01593.20|4.1e-97,NAD_binding_8|PF13450.2|1.5e-11,SWIRM|PF04433.13|3.1e-08,Thi4|PF01946.13|3.1e-06,Pyr_redox_2|PF07992.10|3.9e-06,FAD_binding_2|PF00890.20|7.3e-06,FAD_binding_2|PF00890.20|5.2e+03 R_Transcript_42414:79-2463(+)
MDPNTATTTTTANSPSPPPPSTTTATNPNGNATSDDVSTPSNPLSPPPPEPDDETTTTTTASDLPIPKRRRKRKHYPGMISSMVLRPHSSRTSSLLHLTDTISLPHRRRRRRISPSQPPSLDVDSLIALSVGFPLDSLTEEEIEYGVVSSLSSSSQDHSLYISARNHLLSRWRSDVTSPVTLPSLSPSPHLSMAHSFLLHHGYINFCLSTPPPSPLTSSPNVIIIGAGLAGLTAARQLTHMGFKVVILEGRARPGGRVKTKKMQGNGVVGAADLGGSVLTGINGNPLGVLARQLGFPLHKVRDICPLYLPDGKSIDKEVDSRVEAAFNKLLDRVCKLRQVMMEELNCVDVSLGTALEAFRKVFNVADDAQEKMLLNWHLANLEYANASLLSSLSMAYWDQDDPYEMGGDHCFIPGGNERFIRALAEGLPIFYERRVESVRYGVEGVVVYANGQEFRADMALCTVPLGVLKRGEIEFLPPLPERKKEAIDRLGFGLLNKVAMLFPYNFWGGDLDTFGHLSEDPKRRGEFFLFYSYSSVSGGPLLVALVAGEAAIEFEKVSPVEMVERVMDILRGIFYPKGVDVPDPVQAVCTRWGQDRFSYGSYSYVAIGASGDDYDILAESIGCGRVFFAGEATNRQYPATMHGAYLSGMREAANILKAAKRRSLFPKVDDGNAENAGSKESHDDLSRLFVKPDLKVGNLCVLFDPRSDNPEAHSLLRVLFRGEKLETGALHLYGLLKRRQAVELSKVDGDVNRLKMLNQMFGVRLVGRKGLCSDAESLVAALCSKACSKEDGS*

Click here to download the sequence:
Link to NCBI Protein BLAST