Transcript Information: R_Transcript_42519.p1


Annotated TAIR IDAT5G49980.1
Annotated Gene Nameauxin F-box protein 5
Annotated Gene Symbol(s)AFB5
Annotation TypeOrtholog
Chromosome Positionchr5:20334420-20336531 | Reverse length=619
E-Value7.4e-311
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 133.806324322857
Replicate 217.855677328818
Replicate 324.292691467516
Condition 2: 8 Hour
Replicate 123.127825378743
Replicate 223.676227831844
Replicate 333.679627100684
Condition 3: 24 Hour
Replicate 132.140930118786
Replicate 224.05691263863
Replicate 331.231363494413


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42519.p1 GENE.R_Transcript_42519~~R_Transcript_42519.p1 ORF type:complete len:595 (+),score=84.97,LRR_6|PF13516.2|87,LRR_6|PF13516.2|38,LRR_6|PF13516.2|1.4e+04,LRR_6|PF13516.2|8.8e+03,LRR_6|PF13516.2|1.8e+02,LRR_6|PF13516.2|1.7e+02,LRR_6|PF13516.2|1.6e+03,LRR_6|PF13516.2|1.8e+03,LRR_6|PF13516.2|3.4e+02 R_Transcript_42519:547-2331(+)
ATGAGAGAGAACAACATCGCCGCCGTCCACGGCAGCGATGGGTTCAGCTACAACACCCCATGTGCCGATCAAGTCCTAGAGAACGTTCTAGAAAACGTCCTCCAATTCCTCACGTGCCGGAAAGACAGAAACTCAGCCTCCCTCGTTTGCAAGTTCTGGTACCGTGCGGAAGCCCTCACACGATCCGACCTCTTCATCGGCAACTGCTACGTCATCTCCCCACGTCGGACTACCGAGCGTTTCCGCCGAGTCAGATCGGTTGTTCTTAAAGGTAAACCCCGCTTCGCTGATTTCCAACTCATGCCACCTAACTGGGGGGCCCACTGTACTCGCTGGTTCACCTCTTTTGCAGATGCCTATCCTTGGCTCGAACGGATTTTCCTCAAGCGTATGTACCTCACTAATGATGATCTCGCACTCCTCGCTTCTTCTTTTCCTTCCTTGAAGGAACTCACTCTCGTTTGCTGTGAGGAGTTCGGCACTTATGGACTCTCTCTTATCGCCTCCAAGTGCAGACAGTTGAGAGTGTTGGATCTATTTGAGGATGAAGTGTTAGATGATGGAGTGGATTGGATATCTTGCTTTTCTGAAACTGGGTCTTGTCTCGAATCGCTTACTTTTGATTGTGTTGAATGCCCCATTAATTTTGGTGCCTTAGAGAAGCTCTTAATAAGGTCTCCTAATTTGAAGAAGCTTAGGGTTAATCGTTTTGTTTCGGTTGACCAGTTGCATCGACTCATGATTCGAGCTCCCCAGTTAACTCATCTGGGTACTGGTTCTTTTAGTCCTTCTTCTGATGTCAGGCAGGAGACTGAACAGGAAATGGATTACCGAGCTGCATTTGCTGCTTGTAAATCTCTTGTTTGTCTTTCCGGTTTTCGAGAAACTGTTCCTGAACTTCTCCCTGCTATCTATCCTGCTTGTGCCAACCTCACTTCCTTGAATTTTAGCTATGCCAATATCAACGCCGAGCAGCTCAGATCCGTTATTTGCCATTGCCACAAACTCCAGACTTTTTGGGTTCTTGATACGGTGGGGGATGAAGGCCTCCAAGCTGTGGCTGCAACCTGTAAAGATCTTCAAGAGCTTCGTGTTTTCCCCTTTGATGCTCGCGAGGATAGTGAGGGATTCGTGTCTGAGGTTGGACTGCTGGCTATTTCTGAAGGGTGTAGGAAGTTGCGATCCATTTTATATTTCTGTCAGCAGATGACGAATGCTGCTGTCACTGCTATGTCCAAGAATTGTCCGGATCTTGTGGTTTTCCGGCTCTGTATCATGGCTCGCCACCTCCCTGATCATGTCACCAATGAGCCTATGGATGAAGGGTTTGGAGACATTGTTAAGAACTGCAAGAAACTTACGCGTCTTGCGATTTCTGGGTTGTTGACTGATAAGGCCTTCAGATATATCGGTGAGCATGGGAAATTGGTTCGCACCCTGTCTGTTGCTTTTGCTGGGGATACAGACATGGCGTTGAAGTATGTGCTCAAGGGTTGCCCCAATTTGCAGAAGCTTGAGGTGAGGGATAGCCCCTTTGGTGACTCGGTATTGCAAGCTGGTTTGCACCACTTTTACAACATGAGGTTCCTATGGATGTCTGCTTGTAGGCTGACCCTTCCAGCTTGCAGGGAGATTGCAAGACAAATGCCCCATTTGGTAGTCGAGGTGTTTAAAAATTCCGAGGAAGCAGTTGATGACAAGGATCCATATGTTGATACATTGTATATGTACCGGTCCCTTGAGGGGCCACGGAATGATGCACCAGAGTATGTGAGAATTCTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42519.p1 GENE.R_Transcript_42519~~R_Transcript_42519.p1 ORF type:complete len:595 (+),score=84.97,LRR_6|PF13516.2|87,LRR_6|PF13516.2|38,LRR_6|PF13516.2|1.4e+04,LRR_6|PF13516.2|8.8e+03,LRR_6|PF13516.2|1.8e+02,LRR_6|PF13516.2|1.7e+02,LRR_6|PF13516.2|1.6e+03,LRR_6|PF13516.2|1.8e+03,LRR_6|PF13516.2|3.4e+02 R_Transcript_42519:547-2331(+)
MRENNIAAVHGSDGFSYNTPCADQVLENVLENVLQFLTCRKDRNSASLVCKFWYRAEALTRSDLFIGNCYVISPRRTTERFRRVRSVVLKGKPRFADFQLMPPNWGAHCTRWFTSFADAYPWLERIFLKRMYLTNDDLALLASSFPSLKELTLVCCEEFGTYGLSLIASKCRQLRVLDLFEDEVLDDGVDWISCFSETGSCLESLTFDCVECPINFGALEKLLIRSPNLKKLRVNRFVSVDQLHRLMIRAPQLTHLGTGSFSPSSDVRQETEQEMDYRAAFAACKSLVCLSGFRETVPELLPAIYPACANLTSLNFSYANINAEQLRSVICHCHKLQTFWVLDTVGDEGLQAVAATCKDLQELRVFPFDAREDSEGFVSEVGLLAISEGCRKLRSILYFCQQMTNAAVTAMSKNCPDLVVFRLCIMARHLPDHVTNEPMDEGFGDIVKNCKKLTRLAISGLLTDKAFRYIGEHGKLVRTLSVAFAGDTDMALKYVLKGCPNLQKLEVRDSPFGDSVLQAGLHHFYNMRFLWMSACRLTLPACREIARQMPHLVVEVFKNSEEAVDDKDPYVDTLYMYRSLEGPRNDAPEYVRIL*

Click here to download the sequence:
Link to NCBI Protein BLAST