Transcript Information: R_Transcript_42596.p1


Annotated TAIR IDAT5G08430.1
Annotated Gene NameSWIB/MDM2 domain;Plus-3;GYF
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2716974-2720095 | Forward length=553
E-Value9.7E-131
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.932256570061
Replicate 29.3986817741875
Replicate 310.872961595471
Condition 2: 8 Hour
Replicate 111.415707306486
Replicate 213.635605311939
Replicate 314.196276549391
Condition 3: 24 Hour
Replicate 114.232289277985
Replicate 211.809995047826
Replicate 312.08999904158


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42596.p1 GENE.R_Transcript_42596~~R_Transcript_42596.p1 ORF type:complete len:592 (+),score=146.34,Plus-3|PF03126.14|2.7e-11,SWIB|PF02201.14|5e-11,SWIB|PF02201.14|8.7e+03,GYF|PF02213.12|2.3e-08 R_Transcript_42596:254-2029(+)
ATGTACAATAGCAATGAGCCAGCACCTTTCCTATGGATTGAGGACGGCAAAGAGCAAGCCATTACACCGAGGACAAGAAAATGGACGAAAAAGAAAAAGGAATTTCTGGGGTGGGGTTCGAGACAACTCATAGAATTTTTGGAATCAATTGGCAAGGAGACTGAGAAGGCGATATCACAGCATGATGTCACTGAGATCATCAATAAGTATGTCAATGGGAACAATCTCATTCATCCTGAAAAGAAGAAGAAGGTGTTGTGTGATGATAGGCTCCTAGCTCTCTTTGGGAGGAAGGCTATATTTCGGAATAAGATATACGACCTCTTGGAAGCACACTTGGCTGAGAATCAACTTAATTCAGATGATGACCTTTTCTACAGCTCAGACGAAAAGGAAGAACAGTCCTTCAGGTGCAAGAAGCCAAAAGTCTCAGGTGTGGACAGGAAAACCCTGCCCAAGAAGAAGGTTGCAGAAGTTCCAAAAAGCAGTTTGGCAGCTATCATTCCTGAAAACATCAAGCCCGTGCATCTGAAAAGGAGTCTGATTCAAGAGCTTCTCAAGCAACCAGAGACATTTGAGGGAAAAGTCGTGGGAAGCTTTGTGAGGATCAAATCTGATCCACTTGATGTCTTTCAGAAGAATTCTCATCAGCTTGAACTTGTAACAGGTGTAAAGGCAGGTGATGCAGCTAATGCCCCTACCATTTTGCAGATTTCAGGTGTGACAAGTGAAATTAGCATAAAAGCAATTTCAGAAGATAATTTTTCTGAGGAAGAGTGTGAAGATTTACACCGAAGAGTCAAAGATGGTTTAATAAAGCAGCCTACTGTAGGGGAGCTTGAGCAAAAAGTTGAAATTTTGCATGAGGACATCACAAAACATTGGATTTCAAGAGAACTTGCGCTTCTGAAAAATCTTATTGATCGGGCAAATGAGAAGGGATGGCGACACAGAGTGACAGAGTACTTGGACAAAAGGAAGCTGCTTCAAACTCCTTCTGAACAATCACGCTTGCTGAGTGAGATCCCAAAAGTGAAAGCAGAAGTGCAGGTTGAGACTATTCCAGATGGTCCGCCAGATGGTGTAAATCAAAGCACTGATGATTCACCTAAAGTTACTGATTGGGACTGGGAACCTTACTATGGTTCAGCAGCTAAAGGAGCTGCAACAGAAGTATCAACTAAGCAGGATGCTAAAGAAAAAATAGAAATCAGAACAAGCAATGGTGATGCTCAGTGCATAAATCCCCAAGAGGTAGCTGCCCTTCCTGAAGCAGAGGCAACAAGAGTAGAAAGCAATGGGCATGTTCATTCCTATCAACCAGAAGATAAACATTTTCCTAAGATGGAAACAGTTGGAGTGGTAAGCAACAGTCATACTGTAACCAAGATTTTAAGGTCAGATCCTACACGGATCTACAGGACAGAAGAAACAGGGGTATTTAAAAATGGGCATGTTGAGGTGCCAACTTCGAAAGCAACAGATGGCATGGAAAGTATAGAAAGGAAACAAGTGCAGGTGATTGATTTGAGTGACGAGGATGAGGAACCCAAGGTTTTTTGTATCAAGAAACCGATTCGTAATCCCCTTGAAGAATTGATGTGGTATTACATTGACCCTCAGGAGAATTACCAGGGGGCATTCTCGTTGGCATCTCTAAAGCGATGGAGGGATGCAGACTATTTCCCACCCCATTTCAGAGTCTGGAAGGCCGGTCAGAGTCCAAAGGAAGCAGTTTTGTTGAGCGATATTCTTCGACAAACTTTGTCGAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42596.p1 GENE.R_Transcript_42596~~R_Transcript_42596.p1 ORF type:complete len:592 (+),score=146.34,Plus-3|PF03126.14|2.7e-11,SWIB|PF02201.14|5e-11,SWIB|PF02201.14|8.7e+03,GYF|PF02213.12|2.3e-08 R_Transcript_42596:254-2029(+)
MYNSNEPAPFLWIEDGKEQAITPRTRKWTKKKKEFLGWGSRQLIEFLESIGKETEKAISQHDVTEIINKYVNGNNLIHPEKKKKVLCDDRLLALFGRKAIFRNKIYDLLEAHLAENQLNSDDDLFYSSDEKEEQSFRCKKPKVSGVDRKTLPKKKVAEVPKSSLAAIIPENIKPVHLKRSLIQELLKQPETFEGKVVGSFVRIKSDPLDVFQKNSHQLELVTGVKAGDAANAPTILQISGVTSEISIKAISEDNFSEEECEDLHRRVKDGLIKQPTVGELEQKVEILHEDITKHWISRELALLKNLIDRANEKGWRHRVTEYLDKRKLLQTPSEQSRLLSEIPKVKAEVQVETIPDGPPDGVNQSTDDSPKVTDWDWEPYYGSAAKGAATEVSTKQDAKEKIEIRTSNGDAQCINPQEVAALPEAEATRVESNGHVHSYQPEDKHFPKMETVGVVSNSHTVTKILRSDPTRIYRTEETGVFKNGHVEVPTSKATDGMESIERKQVQVIDLSDEDEEPKVFCIKKPIRNPLEELMWYYIDPQENYQGAFSLASLKRWRDADYFPPHFRVWKAGQSPKEAVLLSDILRQTLSK*

Click here to download the sequence:
Link to NCBI Protein BLAST