Transcript Information: R_Transcript_42604.p1


Annotated TAIR IDAT1G27595.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:9596475-9602917 | Forward length=961
E-Value2.8E-297
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.0851841856066
Replicate 24.781962839911
Replicate 37.8256049253824
Condition 2: 8 Hour
Replicate 16.0199034485686
Replicate 27.2512663587555
Replicate 310.11616911649
Condition 3: 24 Hour
Replicate 19.6263505419333
Replicate 28.1335004505975
Replicate 39.8709256431106


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42604.p1 GENE.R_Transcript_42604~~R_Transcript_42604.p1 ORF type:complete len:1326 (+),score=312.11,Symplekin_C|PF12295.4|4.5e-64,DUF3453|PF11935.4|1.5e-45 R_Transcript_42604:294-4271(+)
ATGGCGGATAATTCAACAAGAGAGCAAGCACTCTCTCTCCTTGCTACTGCTAACAATCATGGAGATTTGGCTGTCAAGCTCTCTTCATTACGCCAAGTCAAAGACATTCTCTCTTCCTCCTTTTCTTCTACCGAAAAACATCAACAACAACTACAACAACAACCTATTGCTTCTGATGTTTTCCCCTTTTTGGTCGAGCTTCAATCTTCTCCTGAACCTCTCGTTCGCAAATTCCTTTTGGAGGTAATAGAGGAGATTGGTTTGAGAGTTCTGGACCATTCTTCGATGCTAATGCCAGTCCTGTTGGCTCTTGTAAAGGATGAAGATCATGCTGTTGCTCGTCAGTCTATTGTTAGTGGGATGAAATTTTTATGTGCTGTAGTTGAGGAGATGGCTTGGCAGTTTCATCACCATGGTAAGGTTGATAGATGGGCTGAGGAAATCTGGATGCGGATGATTGAGTTCAAGGATGTTGTTTGTTCTCTTGTTTTTGAGCCGGTTTCCATGGGGACAAGGTTATTGGCATTTAAGTTCTTGGAAACTTGTATATTAATGTTTACGCCAGATACAAGCAAATCTGATAGACCAACCTTTGGAGGCAATGAATGCAGGTTCAATGTTTCGTGGCTGACTAGTGGCCACCCAACTCTAGATCCAACAAAACTCAAATCAGAAGCTAATATGTTATTAACCAATTTATTAGATATGTTGCAATCATCGAGCAGTCTTCCTGGTCCAGTGACAATTGCCATTGTCAATTGTCTGGCAACTATTGCAAGAAAGAGACCTGATCACTATGGTAAAGTGTTGTCTGCACTTCTTGATTTTCATTCAAACTTGGAGATGACACGAGAGGGTCATATGGCTAGCTTGCAGTATTCTGTCAGGAGTGCCTTGTTGGGATTCCTGAGATGTACTCATCCAGTCATCAGTGAGTCCAGGGATAGATTGGTCAGGCTCCTGCGGTCAATGAATGCTGGGGATGCTGCTGATCAAGCTCTTCGACAAGTTGACAAAATAATGAGAAATAATGAGCGCTTATCACGTGATGCTCGGGTTAAGGAGGATCAGCCATCCAGCCAGCAGCTATTATCTGGTGAAAGTATGAAGAGGAGGTTGGTGCCTTCTGAAATTGAAGACCCTATTAATGGTCCAGAGATGGCTTCCAAACACATGCATTTTACTTCAAATGGCAAGTCATCGGATGTGGTTCAGATGAATCAGTCTGGAGATGATAAGCACACTATTAATGGGATCTCTTCTAAAGTTCCAATGCTGAATTGTAATTTGAACCCTGTTGAGCAAATGATTGCTGTAATTGGTGCTTTACTAGCCGAAGGTGAAAGAGGTGCTGAGTCACTTGAACTTTTAATATCTCAAATTCATCCTGATCTGCTAGCTGATATTGTCATCACCAATATGAAGCATTTGCCTAAGACTCCACCACTAGCAAAACCCGGTAGCTTGCCCTTAAATGCACAACCACAATATACTTCTGTAGCCACAGTTGTGAAGGCTGCTGCTCTTGAGACGCCAACTTTACCAGTTGAATCTTCAGTTCCTACCTCACAAGGGTCCATTACAGCAACTAATGTCAGCAAATCTCTTCCTGATATCTCTAACTCTACCAACCCCCCTGCAGATTCTAGACGTGATCCAAGAAGGGATCCCCGTCGCTTGGATCCACGGCGAGTTGCCACACCTGTTGAAGCTCAGTTGCTACCTACTCCAGAGGAGATCACCAATGTGCAGCCTGGGTTGGAATGTCCTGCTTCTGTAAATAAATCTCTATCTCTACCCGCTGTGCCAAGCACTGAGCAGCTCTGGCCACAGTCAATGCCAGCCTCTGAAGTTGAGGGGAGACTTTTGAAAATTGAACAAGGAACCCAGCAAGAGGAATTAGCAGATGGAGTGAGGGAGTTGTCATCCAGTTCAGAAGTTAAAGTGTCTGTTGAACACACAATTTCTCCTGGTGCTGATGTTGATGAGAGCTTCATGGTGCCATTATCCTTGGATATTCCGTTAACAAATGCAACAGACGCCTCATCGGCTGAAGAGTTTGATGACTATTCTCCTGCTGTTTCAAACATATCTGCATCTGAGGAGACTAGTCAAGAGTTGCCCCAAGTTCCATCTTACATTGATTTATCGCAGTATCAGACACAATCTGTGAGGAAATTGGCAGTTGAACGGATTGTTAAGTCATACAAACATCTGAAAAATAAAGATTTGTGCCGGACTAGGATGGCGCTACTTGCACGATTGGTCACTTGGATGGATGCCGATGAGTTCTTAGCAATGATGGTGCAAGAGGATATGGTATTGGATTACAGAGATCAACAGGGACATGAGCTTGTAATGCATATATTATACCATCTTGATTGTCTGAGGACCGTAGAGTCAAGTGACCAATCGGCGGGGACTGCTGACTTGTATGAGAAGTTCCTTATTGGAGTGGCAAAATCTTTGCTCGATACTCTGCCGGCTTCAGACAAGTCTTTCAGCAGACTACTTGGTGAAGCTCCAACATTGACTGACTCTATTATGAGACTGCTAGAGAATCTGTGCTGCCCTGATGGTTCTGATCAGCGGGGAAAAGATAATCGAGATGACCGTGTCACTCAGGGCCTTGGGGTTGTTTGGAGCTTGATTCTTGGGCGACCGCTTAACCGGCAGGCCTGTTTGAACATTGCACTGAAGTGTGCTGCTCATTCAGAAGATGATACTCGTGCTAAGGCTATCCGGCTGGTTGCAAACAAACTTTATCCACTGAAATATGTGTCTGAAACAATTGAGCAGTATGCTACAAACATGTTGCTCACAGCTGTCAACAGCACTGCAGAAGCTGATGCTTCACAGTGTGGGTCCAGTGATCCCAGAAGAGATCAAGTAGGATTTGAAGAAACTTCTGTTAGTGGTTCTCAACATTCAGAGTCTGTCAGCATATCACTTCCTGAAGCTCAACGTCTGATATCTTTGTATTTTGCCCTTTGTACAAAGAAACCTGGCCTTCTTCAGCTTGTATTCAATGTCTATGCGAGGTCTGGTAGAAGTGTGAAGCAGGCTATCCATCGTCATATTCCAATTTTGCTGAGGACACTGGGGTCAGCTTATTCTGAACTACTACGCATAATATCTGATCCACCTTTAGGAAGTGAAAACTTGCTAATGTTGGTGCTCCAAGTACTCGCTGAACAAACAACTCCTTCACCTGATCTTATTACTACTGTCAAACATTTATACGAAACTAAGCTGAAGGATGCTACAGTCCTGATTCCAATGCTATCTTCACTATCGAAGGATGAGGTTTTGCCCATATTTCCTCGGCTTGTTGACCTTCCATTAGATAAATTTCAGCAGGCATTGGCTCACATTTTACAGGGCTCAGCTCATACTGGTCCAGCTTTAACACCTGCTGAAGTCTTGGTTGCTATCCATGACATCGTACCAGAGAAAGAAGGAATTGCACTTAAAAAGGTAACAGATGCTTGCTCAGCTTGTTTTGAGCAGCGCACTGTATTCACACAGCATGTTTTGGCAAAGGCTTTGAACCAGATGGTTGATCGAACACCTCTTCCTCTTCTTTTCATGAGAACAGTTATCCAGGCAATTGATGCTTTTCCTACACTGGTTGATTTTGTCATGGAGGTACTCTCCAAGCTCGTTAGTAGACAGATCTGGAAAATGCCTAAGCTTTGGGTAGGATTTATGAAATGCGTGTCGCAGACACAGCCACATTCTTTCTGTGTATTGTTGCAGTTACCTGCACCTCAGCTTGAAAGTGCTCTAAACAAATACACTAGTCTCAGAGGGCCTCTTGCCGCTTATTCAAGCCAATCCAGCATAAAAAGTTCATTACCGAGATCAACCCTTTCTGTTCTTGGTCTTGCAAATGAATCGCACTTGACACCACCACATGTTGCATCTCCCATGCATACTTCTGATACGAGTTCTGTCCGTGGGGCGACACCAACGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42604.p1 GENE.R_Transcript_42604~~R_Transcript_42604.p1 ORF type:complete len:1326 (+),score=312.11,Symplekin_C|PF12295.4|4.5e-64,DUF3453|PF11935.4|1.5e-45 R_Transcript_42604:294-4271(+)
MADNSTREQALSLLATANNHGDLAVKLSSLRQVKDILSSSFSSTEKHQQQLQQQPIASDVFPFLVELQSSPEPLVRKFLLEVIEEIGLRVLDHSSMLMPVLLALVKDEDHAVARQSIVSGMKFLCAVVEEMAWQFHHHGKVDRWAEEIWMRMIEFKDVVCSLVFEPVSMGTRLLAFKFLETCILMFTPDTSKSDRPTFGGNECRFNVSWLTSGHPTLDPTKLKSEANMLLTNLLDMLQSSSSLPGPVTIAIVNCLATIARKRPDHYGKVLSALLDFHSNLEMTREGHMASLQYSVRSALLGFLRCTHPVISESRDRLVRLLRSMNAGDAADQALRQVDKIMRNNERLSRDARVKEDQPSSQQLLSGESMKRRLVPSEIEDPINGPEMASKHMHFTSNGKSSDVVQMNQSGDDKHTINGISSKVPMLNCNLNPVEQMIAVIGALLAEGERGAESLELLISQIHPDLLADIVITNMKHLPKTPPLAKPGSLPLNAQPQYTSVATVVKAAALETPTLPVESSVPTSQGSITATNVSKSLPDISNSTNPPADSRRDPRRDPRRLDPRRVATPVEAQLLPTPEEITNVQPGLECPASVNKSLSLPAVPSTEQLWPQSMPASEVEGRLLKIEQGTQQEELADGVRELSSSSEVKVSVEHTISPGADVDESFMVPLSLDIPLTNATDASSAEEFDDYSPAVSNISASEETSQELPQVPSYIDLSQYQTQSVRKLAVERIVKSYKHLKNKDLCRTRMALLARLVTWMDADEFLAMMVQEDMVLDYRDQQGHELVMHILYHLDCLRTVESSDQSAGTADLYEKFLIGVAKSLLDTLPASDKSFSRLLGEAPTLTDSIMRLLENLCCPDGSDQRGKDNRDDRVTQGLGVVWSLILGRPLNRQACLNIALKCAAHSEDDTRAKAIRLVANKLYPLKYVSETIEQYATNMLLTAVNSTAEADASQCGSSDPRRDQVGFEETSVSGSQHSESVSISLPEAQRLISLYFALCTKKPGLLQLVFNVYARSGRSVKQAIHRHIPILLRTLGSAYSELLRIISDPPLGSENLLMLVLQVLAEQTTPSPDLITTVKHLYETKLKDATVLIPMLSSLSKDEVLPIFPRLVDLPLDKFQQALAHILQGSAHTGPALTPAEVLVAIHDIVPEKEGIALKKVTDACSACFEQRTVFTQHVLAKALNQMVDRTPLPLLFMRTVIQAIDAFPTLVDFVMEVLSKLVSRQIWKMPKLWVGFMKCVSQTQPHSFCVLLQLPAPQLESALNKYTSLRGPLAAYSSQSSIKSSLPRSTLSVLGLANESHLTPPHVASPMHTSDTSSVRGATPT*

Click here to download the sequence:
Link to NCBI Protein BLAST