Transcript Information: R_Transcript_426903.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.3202273851705
Replicate 20
Replicate 30.20093629470309
Condition 2: 8 Hour
Replicate 10
Replicate 20.39229617265238
Replicate 30.47767396369439
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.19199740953419


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_426903.p2 GENE.R_Transcript_426903~~R_Transcript_426903.p2 ORF type:5prime_partial len:114 (+),score=23.88,UBN2_3|PF14244.2|8e-07 R_Transcript_426903:3-344(+)
TATGGTCAGTCAAATGCTACTAGGAAGTTTCAGGTTCACAAACATATAAATGAAATTTCTCAAGGCAATTTGTCTGTCACTGAATATTACAAAGCTTTGAAAACCTCCTGGGATGAGTACTTGTCTTTACTCACTTTACCTGCTTGTACATGTGGGAGTAGCACTGCCTTTCTTGACATTCTGCAAGAACAACAAACTCTACAGTTTCTCCTTGGTCTTAATGATGATTTTGTTCATGTTCGAGGCAATGTTTTGATGATGAAACCTCTACCTAATCTCAGCCAAGCATATAGATATGTGTATCAGGAAGAAAAAACAAAGGGAATGTGGTGTGTCAGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_426903.p2 GENE.R_Transcript_426903~~R_Transcript_426903.p2 ORF type:5prime_partial len:114 (+),score=23.88,UBN2_3|PF14244.2|8e-07 R_Transcript_426903:3-344(+)
YGQSNATRKFQVHKHINEISQGNLSVTEYYKALKTSWDEYLSLLTLPACTCGSSTAFLDILQEQQTLQFLLGLNDDFVHVRGNVLMMKPLPNLSQAYRYVYQEEKTKGMWCVS*

Click here to download the sequence:
Link to NCBI Protein BLAST