Transcript Information: R_Transcript_42722.p1


Annotated TAIR IDAT1G52380.1
Annotated Gene NameNUP50 (Nucleoporin 50 kDa) protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19509979-19511301 | Forward length=440
E-Value9.5E-120
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 146.202807416632
Replicate 238.290128214544
Replicate 344.126148539017
Condition 2: 8 Hour
Replicate 145.473749187741
Replicate 249.812857315855
Replicate 356.480681260758
Condition 3: 24 Hour
Replicate 158.521910388478
Replicate 252.381239865121
Replicate 363.513428778943


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42722.p1 GENE.R_Transcript_42722~~R_Transcript_42722.p1 ORF type:complete len:448 (+),score=153.26,Ran_BP1|PF00638.14|1.9e-17,NUP50|PF08911.7|1.9e-16,NUP50|PF08911.7|1.6e+04 R_Transcript_42722:219-1562(+)
ATGGCGGATGAAAATCAGCCTTCAAAGAAAAGAGCTGCTGGTAGAGAGTTATCTCGAGACAATCCTGGACTTGATGATGACGAAGATGTTCCACAGGAGATGGGAACTTTCAAGAAGGCAAGCGATGAAGTGCTGGCTGGTCGAAGAATAGTGAAAGTCCGTCGTCAGCAAACATCTTCAACGCCCTCTGCTCCCTCATCAAATCCATTTGCAGGGATCAGTTTGGTCCCTTCTAACCCCACTGCTATCCCTGCCAATGCTAATACTGAAGGGCAGGCTGCTGAAGACAAAATAGCTGGTGAAGATCCAGATACAAAAGATGAAACAAACTCAGAGGCTGAGGTGGAAAGTAAAGAACCAGAGGAGAAACTTGGAGAGGCTGCAGTAGAATCTAATGAAGACAAGGAAAAAGTAGTGCCTGCTGACCAAGCTGCTGATGCTGCTAATACTTCTGAAAAGGAATCAATTGATGAACCTGCTCAAAATGATAAAGCAGATGCTGGTGATACTGCTAAAAAGGACACTGAGGCCCAGTCAACTGATAAGAAAGAAGGTGATGGCAATGCTGAGAAAACAACTGAAGCTGAGCCTGCTGGTGATGAAGAAGCTGAAGGCGACAAGACTGAGAACAATGACAAGGGACAGGACGAAAAACCTGATGGTAATGGTAGTGGTGTCGGTGGCTCCTTGAGTTCATTCCAGCAACTTTCAAACAGCCAAAATGCATTCACTGGACTCTCTGGGACTGGATTTTCCAGCTCCACATTTTCATTTGGGTCACTTCAAAAAGATGGGTCTCCTTCACAGCCATCCCGTCCAACCTTCAGTTTTGGCACTCCTACTAATGGCAGTACACCTCTTTTTGGGACATCAGGGTCATCTCTGGGCAGCAAGAGTGAGGGAAGTGCATTCCACGCTATGCCAGAGGTGCCGAGGGAAACAGGGGAAGAGAATGAAGAAACAGTATTCTCTGCTGATTCAGCACTGTTTGAGTTTTTTGATGGTGGGTGGAAAGAACGTGGGAAGGGAGAGGTGAAAGTGAATGTACTAAAGGGCGAGACCCAGAAAGCCAGGTTGGTAATGCGTGCCAAGGGGAACTTGAGGTTGATTTTGAACGCGAGTCTATTCCCAGATATGAATCTTACCAAGATGGACAAGAAAGGTATCACCTTTGCCTGTGTCAATATCGCCAACGAGGGGAAGGACAGCCTATCAACGTTCGCTCTGAAGTTCAAAGATGTTTCGATTGTCGAGGAGTTTTCTTCAGCAGTTTCAGCACACAAGGATAAACCAGCTGCAGCTTTAAGGACACCAGAAAATTCACCAAAGGCAGCAGACGGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42722.p1 GENE.R_Transcript_42722~~R_Transcript_42722.p1 ORF type:complete len:448 (+),score=153.26,Ran_BP1|PF00638.14|1.9e-17,NUP50|PF08911.7|1.9e-16,NUP50|PF08911.7|1.6e+04 R_Transcript_42722:219-1562(+)
MADENQPSKKRAAGRELSRDNPGLDDDEDVPQEMGTFKKASDEVLAGRRIVKVRRQQTSSTPSAPSSNPFAGISLVPSNPTAIPANANTEGQAAEDKIAGEDPDTKDETNSEAEVESKEPEEKLGEAAVESNEDKEKVVPADQAADAANTSEKESIDEPAQNDKADAGDTAKKDTEAQSTDKKEGDGNAEKTTEAEPAGDEEAEGDKTENNDKGQDEKPDGNGSGVGGSLSSFQQLSNSQNAFTGLSGTGFSSSTFSFGSLQKDGSPSQPSRPTFSFGTPTNGSTPLFGTSGSSLGSKSEGSAFHAMPEVPRETGEENEETVFSADSALFEFFDGGWKERGKGEVKVNVLKGETQKARLVMRAKGNLRLILNASLFPDMNLTKMDKKGITFACVNIANEGKDSLSTFALKFKDVSIVEEFSSAVSAHKDKPAAALRTPENSPKAADG*

Click here to download the sequence:
Link to NCBI Protein BLAST