Transcript Information: R_Transcript_42754.p1


Annotated TAIR IDAT5G28850.2
Annotated Gene NameCalcium-binding EF-hand family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:10877360-10881278 | Reverse length=536
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 141.812801298124
Replicate 226.945252200916
Replicate 336.735619922718
Condition 2: 8 Hour
Replicate 128.385465661066
Replicate 230.891144173193
Replicate 344.97565742607
Condition 3: 24 Hour
Replicate 143.704862648296
Replicate 241.986678036136
Replicate 342.194630701963


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42754.p1 GENE.R_Transcript_42754~~R_Transcript_42754.p1 ORF type:complete len:540 (+),score=114.90,EF-hand_7|PF13499.2|4.6,EF-hand_7|PF13499.2|0.073,EF-hand_7|PF13499.2|0.59,EF-hand_7|PF13499.2|9.8e-20,EF-hand_6|PF13405.2|0.16,EF-hand_6|PF13405.2|1.5e+03,EF-hand_6|PF13405.2|1.2,EF-hand_6|PF13405.2|5.1e+02,EF-hand_6|PF13405.2|0.012,EF-hand_1|PF00036.28|0.027,EF-hand_1|PF00036.28|3.2e+02,EF-hand_1|PF00036.28|17,EF-hand_1|PF00036.28|5.7e+03,EF-hand_1|PF00036.28|0.0031,EF-hand_5|PF13202.2|6.8e+03,EF-hand_5|PF13202.2|0.06,EF-hand_5|PF13202.2|8.9e+02,EF-hand_5|PF13202.2|1.8e+03,EF-hand_5|PF13202.2|0.0013,EF-hand_8|PF13833.2|19,EF-hand_8|PF13833.2|87,EF-hand_8|PF13833.2|5.4e+02,EF-hand_8|PF13833.2|0.27 R_Transcript_42754:501-2120(+)
ATGGAGATGGATTTCAATGGAGATTTGGTATCGCTTGACGCTGAATTGTTACAGTTACCTGAGGTTTCGCCTTTGGCTCTTAAATCCAACCCTTACCTTGCTCAAGACCTCTTTGAACAGTGGCTTTCCCTTCCTGAAACCAATCGTCTGGTGAAATCATTGGTTAATGATGCAAAAGCTGGGAATCCTTTAAATGTCCCTGGAAATGCTTCTAGTGGAAATGCTGCTGCTAGCAATACAATACCATCCATGTTTCCTGCTGGGAGTGCACCTCCACTTTCACCGAGAAGTTCCTCGGGTTCTCCCCGCATTATGAAACAGAGGGCAGGTCCTTCATCCCTAGGAAGTCCTCTGAAAGTTTTGAGTGAGCCAGTGAAAGAGCTGATACCTCAGTTCTACTTTCAGAATGGCCGTCCACCACCAAAGGAACTAAAGGAGCGATGCTTGTTTAGAATAAATCAGTTCTACTATGGTCATACAGAAGGCCTTCAATTGGCTGATTTCAAAGCTGTTACAAAGGAAATTTGCAAGCTTCCATCATTCTTCTCTCCTGTCCTTTTCCAAAAGATTGATGTTAATGGCACAGGATTTGTCACCAGGGATGCATTTGTTGATTACTGGGTCAATGGCAACATGCTGACCATGGACACAGCAACGCAAATCTATACTATCATGAAGAAACCAGATCACAAGTTTTTGACACAGGATGACTTTAAGCCTGTTCTTCGCGAGCTTTTGGCGACTCATCCTGGACTGGAGTTTTTGCAGAGTACACCTGAATTTCAAGAGAGATATGCGGAGACTGTAATATACAGAATTTTTTACTATATTAATAGAGCGGGAAATGGTCAGCTAACTCTCAGGGAGCTGAAGCGTGGTAATTTAATAGCTGCTATGCAACATGCTGATGAGGAAGAGGACATCAATAAAGTGCTCAGGTACTTCTCCTATGAGCACTTTTATGTGATATATTGCAAGTTCTGGGAGTTGGATACAGATCATGATTTCTTGATCGACAAAGAAAACCTAATTAGATATGGGAACCATGCACTTACCTACAGAATTGTTGATAGAATATTTTCTCAGGTTCCAAGAAAGTTCACTAGTACTGTGGAAGGCAAGATGGGATATGAAGATTTTGTTTACTTCATCTTGGCAGAGGAGGATAAATCTTCAGAACCGAGTCTTGAGTACTGGTTCAAATGCGTAGACTTGGATGGCAATGGAGTTATCACCCGAAATGAAATGCAATTCTTTTACGAGGAGCAGTTGCATCGAATGGAATGCATGGCTCAAGAGCCTGTGCTTTTTGAAGATATCTTGTGTCAAATCATTGACATGATTGGGCCTGAGAACGAGAGTTATTTTACCATTCGCGATCTGAAAGGAAGTAAACTTTCAGGAAGTGTTTTTAACATCCTCTTCAATCTAAACAAGTTCATGGCCTTCGAAACTCGTGATCCGTTCCTTATTCGCCAGGAGAGGGAGAACCCAACCTTGACAGAGTGGGATCGCTTTGCACATAGAGAATATATCAGGCTTTCAATGGAAGAAGATGTTGAAGATGCTTCTAACGGAAGTGCTGAAGTCTGGGATGAATCTCTTGAGGCTCCCTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42754.p1 GENE.R_Transcript_42754~~R_Transcript_42754.p1 ORF type:complete len:540 (+),score=114.90,EF-hand_7|PF13499.2|4.6,EF-hand_7|PF13499.2|0.073,EF-hand_7|PF13499.2|0.59,EF-hand_7|PF13499.2|9.8e-20,EF-hand_6|PF13405.2|0.16,EF-hand_6|PF13405.2|1.5e+03,EF-hand_6|PF13405.2|1.2,EF-hand_6|PF13405.2|5.1e+02,EF-hand_6|PF13405.2|0.012,EF-hand_1|PF00036.28|0.027,EF-hand_1|PF00036.28|3.2e+02,EF-hand_1|PF00036.28|17,EF-hand_1|PF00036.28|5.7e+03,EF-hand_1|PF00036.28|0.0031,EF-hand_5|PF13202.2|6.8e+03,EF-hand_5|PF13202.2|0.06,EF-hand_5|PF13202.2|8.9e+02,EF-hand_5|PF13202.2|1.8e+03,EF-hand_5|PF13202.2|0.0013,EF-hand_8|PF13833.2|19,EF-hand_8|PF13833.2|87,EF-hand_8|PF13833.2|5.4e+02,EF-hand_8|PF13833.2|0.27 R_Transcript_42754:501-2120(+)
MEMDFNGDLVSLDAELLQLPEVSPLALKSNPYLAQDLFEQWLSLPETNRLVKSLVNDAKAGNPLNVPGNASSGNAAASNTIPSMFPAGSAPPLSPRSSSGSPRIMKQRAGPSSLGSPLKVLSEPVKELIPQFYFQNGRPPPKELKERCLFRINQFYYGHTEGLQLADFKAVTKEICKLPSFFSPVLFQKIDVNGTGFVTRDAFVDYWVNGNMLTMDTATQIYTIMKKPDHKFLTQDDFKPVLRELLATHPGLEFLQSTPEFQERYAETVIYRIFYYINRAGNGQLTLRELKRGNLIAAMQHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSTVEGKMGYEDFVYFILAEEDKSSEPSLEYWFKCVDLDGNGVITRNEMQFFYEEQLHRMECMAQEPVLFEDILCQIIDMIGPENESYFTIRDLKGSKLSGSVFNILFNLNKFMAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDVEDASNGSAEVWDESLEAPF*

Click here to download the sequence:
Link to NCBI Protein BLAST