Transcript Information: R_Transcript_42788.p1


Annotated TAIR IDAT5G67240.1
Annotated Gene Namesmall RNA degrading nuclease 3
Annotated Gene Symbol(s)SDN3
Annotation TypeOrtholog
Chromosome Positionchr5:26824454-26828098 | Reverse length=782
E-Value2.5E-149
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 126.930598129913
Replicate 224.696468112613
Replicate 326.192540120191
Condition 2: 8 Hour
Replicate 122.227947073011
Replicate 223.643883258303
Replicate 325.404815683861
Condition 3: 24 Hour
Replicate 132.131521181397
Replicate 230.597152190411
Replicate 334.35652006181


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42788.p1 GENE.R_Transcript_42788~~R_Transcript_42788.p1 ORF type:complete len:488 (+),score=126.59,RNase_T|PF00929.20|3.3e+03,RNase_T|PF00929.20|1.2e-08 R_Transcript_42788:189-1652(+)
ATGGATGAGAAGCTCGCCTCCGCAGGGAAAGACGCCCTTGTTCAAATTGTCAAGTTGGCACAGAAGCGGGGGATGGAGGGTGATAAAGGAGGATGGAAAGAATTTCTAAAAGTTTATGATAAAAAGTTTGGTGCTAGCATGAGCGACCCAGCTAGGAGGAACCCTGAAGTATTGCTTGCTTTTCTATGTACATTCAAGGAAGAGGATGATTTAAAATATTTTGCAAAAGTTCTGAAGTGCCACTCAAATCGTGAGCTGGTGAAGCAATATGTGAAGTCTGAAGATGCTACATCTCTTGAACAGAGGTTGGTCCGTTTGACCCTTGACCACCCACAATATCCAATTGAGTATTCATTTCCATCACACGAGGAGGAGTGGATTGTTACAAAACCCAGTAAGAAATCCAAGGCGGCGACATCAAATACATTGCTGGCTGTTGATTGTGAGATGGTTCTCTGTGAACATGGAACAGAAGCCTTGGTAAAAATATGTGTTGTTGATCGGGATTTGCAGGTTAAACTCCATGAATTTATCAATCCTGATAAAGCAATTGCAGATTACAGGACACATATCACTGGTGTTTCTGCCCAGGATTTAGATGGAATAACTTGTTCCCTTGCTGATATACAGAAATCACTGAAGAAGATGTTGAATGGGGCTATTTTAGTTGGTCATAGTCTCAGTAATGATCTGAAAGTATTGAAGGTAGATCACACAAAAGTGATAGACACCTCGTATATCTTCAAGTATGGAGAGGAATCTACTAAAAGAAGGCCTTCCTTGAATGATCTGTGTAAGTCTGTGTTGGGTTTTGAGCTTCGCAAGAAGGGTGAACCACATAATTGTCTTGATGACGCTTGTGCGGCTATGAAGCTTGTGGTTGCCAAGATCGAGAAAGGGTTTGATGATGCAATTCCTGTAGCTCAGGATGATGTGCCAGACAGTGACAAGGCCAAGCTCTTCCTTCACAGAATTCCAAAGGATCTGCCAAGTGAAGAACTACATCAGCTTATCCCAGGAGAATTCACAATTGAAGTTCAGACTAGTAGAAAAGGTCGAGGTGACAAGTATTCTGCTCTTGCAATTTTTGGAAGTCCACAAGAGGCACTTGACGCATATGAAAATTTGCCAGGAGATGATGATAAGGACTCCTCTGGGCGGTTGCAGAAACCTGTTTTCATCCAACTCGAGTCCGGTTCAGCAGATAAGCTATATGTCCGTAAAATGACACATGATAATCCTTCCTCCCTGGCTTCTGTGAAGCGGCCATATCCAACCGAGGTAGCTACAGGTGAGTCAAAAAAGTTAAAGACAGAAAAAACTCCTGAACTTTCCCAGGAGAATTCAAGTGTTGATTATGAAAAGGAGATTGCAAGATTGAAGGAATTGCTAAGCCAAAGAGATCAAGAGATTTCTAGCCTGCACAAGATCATAGCTGCTCTCACCAGGAAACAAGGGCTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42788.p1 GENE.R_Transcript_42788~~R_Transcript_42788.p1 ORF type:complete len:488 (+),score=126.59,RNase_T|PF00929.20|3.3e+03,RNase_T|PF00929.20|1.2e-08 R_Transcript_42788:189-1652(+)
MDEKLASAGKDALVQIVKLAQKRGMEGDKGGWKEFLKVYDKKFGASMSDPARRNPEVLLAFLCTFKEEDDLKYFAKVLKCHSNRELVKQYVKSEDATSLEQRLVRLTLDHPQYPIEYSFPSHEEEWIVTKPSKKSKAATSNTLLAVDCEMVLCEHGTEALVKICVVDRDLQVKLHEFINPDKAIADYRTHITGVSAQDLDGITCSLADIQKSLKKMLNGAILVGHSLSNDLKVLKVDHTKVIDTSYIFKYGEESTKRRPSLNDLCKSVLGFELRKKGEPHNCLDDACAAMKLVVAKIEKGFDDAIPVAQDDVPDSDKAKLFLHRIPKDLPSEELHQLIPGEFTIEVQTSRKGRGDKYSALAIFGSPQEALDAYENLPGDDDKDSSGRLQKPVFIQLESGSADKLYVRKMTHDNPSSLASVKRPYPTEVATGESKKLKTEKTPELSQENSSVDYEKEIARLKELLSQRDQEISSLHKIIAALTRKQGL*

Click here to download the sequence:
Link to NCBI Protein BLAST