Transcript Information: R_Transcript_42933.p1


Annotated TAIR IDAT1G55890.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:20901364-20902560 | Forward length=398
E-Value4E-81
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.3311653742362
Replicate 23.3594080666077
Replicate 32.8060753555287
Condition 2: 8 Hour
Replicate 12.8158744689332
Replicate 21.2298485012652
Replicate 32.722741593058
Condition 3: 24 Hour
Replicate 13.5010656022249
Replicate 23.8045321586246
Replicate 34.2133831522277


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_42933.p1 GENE.R_Transcript_42933~~R_Transcript_42933.p1 ORF type:complete len:400 (+),score=87.05,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|0.59,PPR_2|PF13041.2|1.7e-14,PPR_2|PF13041.2|7.5e-08,PPR_2|PF13041.2|2.3e-10,PPR_2|PF13041.2|2.9e-14,PPR_2|PF13041.2|0.083,PPR_2|PF13041.2|7e+02,PPR|PF01535.16|9.9e-06,PPR|PF01535.16|10,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|0.0062,PPR|PF01535.16|51,PPR|PF01535.16|2.4e-06,PPR|PF01535.16|0.014,PPR|PF01535.16|14,PPR_1|PF12854.3|0.0098,PPR_1|PF12854.3|9.8e+02,PPR_1|PF12854.3|1.8e-07,PPR_1|PF12854.3|0.00034,PPR_1|PF12854.3|3.3e+02,PPR_1|PF12854.3|1.4e-09,PPR_1|PF12854.3|0.00077,PPR_1|PF12854.3|45,PPR_3|PF13812.2|2.8,PPR_3|PF13812.2|1.6,PPR_3|PF13812.2|8.5e-06,PPR_3|PF13812.2|8.2,PPR_3|PF13812.2|4.6,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|87,PPR_3|PF13812.2|7.7e+02 R_Transcript_42933:178-1377(+)
ATGGCCACCATAAGAGCTCGTGTAAATCGCTTACTGAAAGCCCAGAAACCAGCAACTGTTGCTCGTTTCTCAACTGTTTCTCAGCCACCAGCAAAAACCCAGATTCCAGTTTCTGTAAAACAGCTAGTGAATGAACCCGATCTCGGAGAGCTCGTAAAGAAGTTCAAGCAACGGGCAACTGAGTCACTCAGTTTTCGCCACCGTCACAACATCTATGACTTCACCATTGCCCGTCTAGCTATTGCAAAGCAATATAATCTCATTGAAGACATCCTCGAGTCTCACAAGGACTTTGAGGAGATAACCCATGAAGGGTTTGCCATTCGCCTCATTCGGTTGTATGGTAGAGCGGGCATGTTCGATCATGCACGCAAGATGTTCGACGAAATGCCTGAACGAAACTGCACCCGAACGGTTAAGTCCTTGAATGCCCTTATAAAGGCTGGGGTGGAATGTAAGAGGTTTGATGAGGTTGGGAAGATTTTTAGGGAGATGTCTTTGGAGTTTTCGATCAATTTGGATTGCTCTTGGTATAATACTATGATCCATGCTCTTTGTGAGATGGGGTCATTGGATGATGCACTTTTGATGGTTGAGGAGATGAAGGCAAAGGGGCTGAGCCCGAATGTCATCACTTTCAATACACTTCTTGATGCGTTTTATAGGGAAAGGGGTTTTGAGGGAGGGGAGAGGATATGGAATATGATGGTTGAGGACAATGTTGTTTGTAATACTCGGAGTTACAACTTGAAGCTCCAGGCTACGGTTGATCTAGGAGAGCTTGATAGTGCGGTTGATTTGTTTGGAACATTGGAGAAAGAAGGGTTGAAGCCTGATGTCAATACTTTCAATGCCTTGATCAAGGGATTCTGTGATCAAGGAAATGTGGAAGAAGCAAAAGGGTGGTTCAATTCATTGGTAGAAAGTGGTGGTACCCCAAATGGAATTACATTTTCGATTCTGATCCCAAGGTTGTGTGACCATGGTGATTATGAGTTGGCGTTTGATTTGTGCAAGAAGATGTTCAACCGGCAACTAGTGGTTGATGAGTCTCTGTTGCAGCTTGTTGTCAAAGTGCTGGCGAAGAATTCGATGGTTAAAGAAGCCGAAGAACTCGTAGAGCTTGGCAACTCGAATACTTATGTTCAATACAACTTAGCATTGCCTGCAGACAGTGAAATCAATAGGAAACCTGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_42933.p1 GENE.R_Transcript_42933~~R_Transcript_42933.p1 ORF type:complete len:400 (+),score=87.05,PPR_2|PF13041.2|1.1e-05,PPR_2|PF13041.2|0.59,PPR_2|PF13041.2|1.7e-14,PPR_2|PF13041.2|7.5e-08,PPR_2|PF13041.2|2.3e-10,PPR_2|PF13041.2|2.9e-14,PPR_2|PF13041.2|0.083,PPR_2|PF13041.2|7e+02,PPR|PF01535.16|9.9e-06,PPR|PF01535.16|10,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|0.0062,PPR|PF01535.16|51,PPR|PF01535.16|2.4e-06,PPR|PF01535.16|0.014,PPR|PF01535.16|14,PPR_1|PF12854.3|0.0098,PPR_1|PF12854.3|9.8e+02,PPR_1|PF12854.3|1.8e-07,PPR_1|PF12854.3|0.00034,PPR_1|PF12854.3|3.3e+02,PPR_1|PF12854.3|1.4e-09,PPR_1|PF12854.3|0.00077,PPR_1|PF12854.3|45,PPR_3|PF13812.2|2.8,PPR_3|PF13812.2|1.6,PPR_3|PF13812.2|8.5e-06,PPR_3|PF13812.2|8.2,PPR_3|PF13812.2|4.6,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|87,PPR_3|PF13812.2|7.7e+02 R_Transcript_42933:178-1377(+)
MATIRARVNRLLKAQKPATVARFSTVSQPPAKTQIPVSVKQLVNEPDLGELVKKFKQRATESLSFRHRHNIYDFTIARLAIAKQYNLIEDILESHKDFEEITHEGFAIRLIRLYGRAGMFDHARKMFDEMPERNCTRTVKSLNALIKAGVECKRFDEVGKIFREMSLEFSINLDCSWYNTMIHALCEMGSLDDALLMVEEMKAKGLSPNVITFNTLLDAFYRERGFEGGERIWNMMVEDNVVCNTRSYNLKLQATVDLGELDSAVDLFGTLEKEGLKPDVNTFNALIKGFCDQGNVEEAKGWFNSLVESGGTPNGITFSILIPRLCDHGDYELAFDLCKKMFNRQLVVDESLLQLVVKVLAKNSMVKEAEELVELGNSNTYVQYNLALPADSEINRKPE*

Click here to download the sequence:
Link to NCBI Protein BLAST