Transcript Information: R_Transcript_430522.p1


Annotated TAIR IDAT1G12840.1
Annotated Gene Namevacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3)
Annotated Gene Symbol(s)DET3, ATVHA-C
Annotation TypeHomolog
Chromosome Positionchr1:4375584-4378220 | Forward length=375
E-Value2E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.11700615996615
Replicate 20
Replicate 30.1468380615138
Condition 2: 8 Hour
Replicate 10.78480336369376
Replicate 20.28667797232289
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.70152899637491


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_430522.p1 GENE.R_Transcript_430522~~R_Transcript_430522.p1 ORF type:5prime_partial len:156 (+),score=7.47,V-ATPase_C|PF03223.11|3e-34 R_Transcript_430522:1-468(+)
GTTGTTTTCAAGCGATTTTTAGATGATATCAAATCCGCAATTCGAGATTTAAAGTTTACAGTACGAGAATTAAAAATTGACCCCGAAAATTTTGTGAGTGGAACTGAAGTTTATCATAATTTGAAAGACGAACTCGTTAGGCAAAAAAGCATTTTCTTATCATGGTGCAAATCCAACTTTGTTGATGCATTCCAAACATGGGTTCACTTGAAAGCCATTCGAGTTCACGTCGAGTGCATTCTTCGATATGGTCTTCCAGTTAACTTCCAAGCTGCTGTCGTCCGACTCAAGAAAGCATCGTTCGAAAAGAAATTGAGAAATAAATTAGCTTTGGAATTCTCAAAAATAAATTCGGTTCATCTTCAGGATGTTAAAGGCCAAGAAGATGTTCCAGGTATTTTGACCGGTGGAGAGAAATTATATCCATACGTCTACCTTGAAATGAATTTAGATTACACTAAAGACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_430522.p1 GENE.R_Transcript_430522~~R_Transcript_430522.p1 ORF type:5prime_partial len:156 (+),score=7.47,V-ATPase_C|PF03223.11|3e-34 R_Transcript_430522:1-468(+)
VVFKRFLDDIKSAIRDLKFTVRELKIDPENFVSGTEVYHNLKDELVRQKSIFLSWCKSNFVDAFQTWVHLKAIRVHVECILRYGLPVNFQAAVVRLKKASFEKKLRNKLALEFSKINSVHLQDVKGQEDVPGILTGGEKLYPYVYLEMNLDYTKD*

Click here to download the sequence:
Link to NCBI Protein BLAST