Transcript Information: R_Transcript_430766.p1


Annotated TAIR IDAT3G10920.1
Annotated Gene Namemanganese superoxide dismutase 1
Annotated Gene Symbol(s)MSD1, MEE33, ATMSD1
Annotation TypeHomolog
Chromosome Positionchr3:3418015-3419581 | Forward length=231
E-Value2E-35
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.54324288555711
Replicate 20.12497797866844
Replicate 30
Condition 2: 8 Hour
Replicate 10.29149839222911
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.13665361445062
Replicate 20
Replicate 30.13028395646963


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_430766.p1 GENE.R_Transcript_430766~~R_Transcript_430766.p1 ORF type:5prime_partial len:168 (+),score=16.96,Sod_Fe_C|PF02777.14|6.9e-37,Sod_Fe_N|PF00081.18|3.1e-09 R_Transcript_430766:2-505(+)
ACTTACGTCAACAACTTAAATGCTGCTTTAGAAAAAGTTGCTGCTAACCCTGAATTAGAACCTTCACTTCATAAGGCTATTAAATTCAATGGTGGTGGTCACCTTAATCACTCTTTCTTCTGGTCAAATTTGGCCCCTAAGAACAAAGAGGGAGGAGTATTACCAAATTCCAACTCTCCTTTAACGAACGCCATCACTCAAAAATGGGGTTCATATGAAAAATTTATTGAAAACTTCAATGCTACCACTGTTGCAGTTCAAGGCAGTGGATGGGGTTGGTTAGCGTGGAACCCAATTAAACAAGAATTAGAAATTCTTACAACTGGAAATCAAGATCTCGTCCAAGAAGTAAAACCAGTTGTTCCTATCCTTACCGTTGACGTTTGGGAACACGCTTATTATCTTGATTATGAAAATAGACGTGCTGAGTTTTTAAATAAAATTTGGCAAATTGTTAACTGGAAGAACGTTGAAGAACGATTCCTTGTTGCTACTAAATACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_430766.p1 GENE.R_Transcript_430766~~R_Transcript_430766.p1 ORF type:5prime_partial len:168 (+),score=16.96,Sod_Fe_C|PF02777.14|6.9e-37,Sod_Fe_N|PF00081.18|3.1e-09 R_Transcript_430766:2-505(+)
TYVNNLNAALEKVAANPELEPSLHKAIKFNGGGHLNHSFFWSNLAPKNKEGGVLPNSNSPLTNAITQKWGSYEKFIENFNATTVAVQGSGWGWLAWNPIKQELEILTTGNQDLVQEVKPVVPILTVDVWEHAYYLDYENRRAEFLNKIWQIVNWKNVEERFLVATKY*

Click here to download the sequence:
Link to NCBI Protein BLAST