Transcript Information: R_Transcript_43292.p2


Annotated TAIR IDAT5G35080.1
Annotated Gene NameINVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:13354552-13356725 | Reverse length=282
E-Value1.9E-98
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 160.500708330045
Replicate 260.555555174158
Replicate 360.907649965928
Condition 2: 8 Hour
Replicate 148.809571848482
Replicate 255.309863362138
Replicate 356.0175533053
Condition 3: 24 Hour
Replicate 152.377248940027
Replicate 248.638418612995
Replicate 352.834889790557


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_43292.p2 GENE.R_Transcript_43292~~R_Transcript_43292.p2 ORF type:complete len:302 (+),score=40.44,PRKCSH|PF07915.9|8.1e-17,PRKCSH_1|PF13015.2|1.5e-06 R_Transcript_43292:146-1051(+)
ATGAAAATGGCGAAATCCATATCACTATGGTTGATCGTTGCATATCTTTTCTTGTATTTGTTGATCCATCAAATTTCGGCGAATCAAATAATATCCGCTCAAACAGGTGCATCACAAAGCCGCAGCTCACGCGAACCAAAATATAAGATTGAATTCCATATGGAAGATTCCCCATACCTTCCTGAGGATGAGCAGGAGTCTGTATTCATGCCAAATACAAATGGGAAGAGTTATATGTGCTTTCTACCCAAGATTGAGAAGACTAAGAGTGGAACACCGGTCATGCAACATAACACAAGCAGCATGATTATGGAAAGTGAGAAGCGGGTGAAAGTAAAAACTCCGGATGAGCTACTTGAGGTTATGGAGGATCACTGCTTTCTAAGGCAAGAGAGTTGGTGGACATATGAATTTTGCTATAAGAAGCATTTGCGGCAATTTCACTTGGAAGATAACAAGGTGGTTCAGGAGTTCATTCTCGGAACTTATGATCGAGAAGCTACCGCTGCTTACATCCAGAATTTTTCTGATGTTTCTGTATTGAAAGATCCACGTTCCAAAGATGCATCTTTGAGGTATCATGCTCATCAATTTACCAATGGAACAACTTGTGACCTTACAAATGATCCTCGAGAAACAGAGGTTAGATTTGTATGTTCAGAGGGCAGATCCATGATTACTTCCATTACAGAGTTGTCCACATGCAAATATGCGCTCACAGTTCAGTCTCAAATGCTTTGTGCACATCCGCTTTTCCAAGAAGAGCGGCCAGTTTGGCATGCCATTCATTGTAATGTGCTTCGCGAGGATACCAAAGATCCGAAAACAGAAGATAATCAACACGCCAAGGAAATAAAATTGGTTCGAGACCTTGAATATCCATTTAATATCGACGCAGATCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_43292.p2 GENE.R_Transcript_43292~~R_Transcript_43292.p2 ORF type:complete len:302 (+),score=40.44,PRKCSH|PF07915.9|8.1e-17,PRKCSH_1|PF13015.2|1.5e-06 R_Transcript_43292:146-1051(+)
MKMAKSISLWLIVAYLFLYLLIHQISANQIISAQTGASQSRSSREPKYKIEFHMEDSPYLPEDEQESVFMPNTNGKSYMCFLPKIEKTKSGTPVMQHNTSSMIMESEKRVKVKTPDELLEVMEDHCFLRQESWWTYEFCYKKHLRQFHLEDNKVVQEFILGTYDREATAAYIQNFSDVSVLKDPRSKDASLRYHAHQFTNGTTCDLTNDPRETEVRFVCSEGRSMITSITELSTCKYALTVQSQMLCAHPLFQEERPVWHAIHCNVLREDTKDPKTEDNQHAKEIKLVRDLEYPFNIDADQ*

Click here to download the sequence:
Link to NCBI Protein BLAST