Transcript Information: R_Transcript_43627.p1


Annotated TAIR IDAT5G45140.1
Annotated Gene Namenuclear RNA polymerase C2
Annotated Gene Symbol(s)NRPC2
Annotation TypeOrtholog
Chromosome Positionchr5:18247416-18257713 | Reverse length=1161
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.074106822616
Replicate 26.2766718175706
Replicate 38.6657763921952
Condition 2: 8 Hour
Replicate 18.0971775619197
Replicate 29.7804209816826
Replicate 312.485234818256
Condition 3: 24 Hour
Replicate 115.203979918876
Replicate 29.6661937113024
Replicate 314.746213739673


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_43627.p1 GENE.R_Transcript_43627~~R_Transcript_43627.p1 ORF type:complete len:1134 (+),score=216.49,RNA_pol_Rpb2_6|PF00562.24|1.3e-117,RNA_pol_Rpb2_1|PF04563.11|1.6e-51,RNA_pol_Rpb2_7|PF04560.16|2.7e-31,RNA_pol_Rpb2_4|PF04566.9|1.7e-22,RNA_pol_Rpb2_2|PF04561.10|7.9e-21,RNA_pol_Rpb2_3|PF04565.12|3.4e-19,RNA_pol_Rpb2_5|PF04567.13|5e-14 R_Transcript_43627:144-3545(+)
ATGGATAAGCAATTCCTTTCAGCCCCCGTAAAATCACCAGTCGACAAATTCCAACTCATTCCGGAGTTCTTGAAGGTGAGAGGCCTTGTGAAGGAACATCTGGATTCTTACAACTACTTTGTGAATACCGGCATAAAGAAGATTATGCGAGTCAACAGTGAAATTAGATCAACTGTTGACCCTGAAATCTATCTCAAATTTAAAGATATAAAAGTTGGCGAACCATCAATTGTGTTGGATGGTGTTGCTGAGAAGATCACGCCACATTCCTGCAGGCTATCAGACATGACTTATGCAGCACCTATAGAAGCCCATATAGAGTATGTCACTGGAAGTCGTGGTGAAAAAGAAATCCGTGAGAAGAAAGATGTTGTTATAGGAAAAATGCCTGTGATGCTGCGAAGTCATTGCTGTGTTCTATATGGAAAGGATGAGACTGAGCTAGCCAAACTTGGTGAATGCCCACTTGATCCTGGAGGCTATTTTATTGTGAAAGGAAATGAGAAGGTGATTATGATGCAGGAACAACTTTCAAATAACAGAATTATTATTGATATTGATAAGAAGGGAAATTTGATTGCATCTGTTACAAGCAGCACAGCAACACTAAGGAGCAAAACAGTCATAGTCATGGAAAAAGATAAGATATATCTACAGCTCAATCAGTTTCAGGGGAAGGTTCCTATATTGGCTGTAATGAAAGCTATGGGATTGGAGACTGACCAAGAAGTTGTACAAATGGTCGGAAGGGATCCACGTTACAGTGATCTACTCCTTCCTTCTATTGAGGAATGTGCGGTTTGTGGTGTAAACACTCAACAGCAGGCGCTTGAGTTCCTTGAGAAAAAGGTCAAAAAGCCGCAATATACTGTTGCTTTGCCACAAAAGGACAACAAAGCTTGGAAGGTCCTCCATGATGTGTTTATTGCTCATGTTCCGGTTCGCAAGAATAACTTCCGCCCCAAGTGTATATACACTGCTGTAATGTTGAGGCGCATGTTGGAGGCGTTCTTAAACAAAGATGCAGTGGATGACAAAGATTATGTTGGGAATAAGAGGTTTGAGCTGTCTGGTCAGTTGCTTTCTCTGCTTTTTGAGGACTTGTTCAAGACCATGAATACAGAGGTGAAAAAAAAAGTGGATGCAATTTTGTCAAAGCCATCTCGATCTAGCAGATTTGATTTTTCCCAGCATATAATCAAAGACACTATCAGCTTTGGCTTAGAAAGAGCAATTTCGACTGGCAACTGGTATGTGAAACGGTTTAGAGTGGACAGGAAAGGCGTGACACAGGTCCTTGGGAGGCTGTCTTTCATTCAGGCCATGGGGTTTCTTACAAAAGTTCAGCCACAGTTTGAGAAGTCCAGAAAAGTTAGTGGACCCAGAGCTTTGCAGCCTAGCCAGTGGGGAATGCTTTGCCCTTGTGACACACCAGAAGGTGAATCTTGTGGATTGGTTAAAAACTTGGCGCTTATGACTCATGTCACTACCGATGAAGAGGAAGGTCCATTAATATCTCTGTGTTACTGCCTGGGGGTTGAGGACCTGGAGTTGCTGTCTGGAGAAGAGCTGCACTCCTCAAATTCTTTTCTTGTGATATTTAATGGACTCATTCTAGGCAAGCACAGGAGGCCACAGCACTTTGTCACTATCATGAGGAGATTGCGAAGGGCTGGCAAGATTGGCGAGTTTGTCAGTGTCTATGTGAATGAGAAACAGCGTTGTGTGTATATAGCTTCTGATGGAGGTCGTGTTTGTCGCCCACTTGTTATCGCTGATAAAGGTGTATCAAGGGTCAAACAAGAACATATGAAGGAGTTGTCGGATGGAGTCCGCACCTTTAATGATTTCTTGCGTGATGGTTTGATCGAGTATCTTGATGTTAATGAGGAAAATAATGCGTTGATTGCCTTGTATGAGGAAGATGCGACGCCAGAAACAACTCATATCGAAATTGAGCCATTTACAATTCTAGGTGTATGTGCTGGGCTAATCCCTTTTCCCCATCACAATCAGTCACCCAGAAATACATATCAGTGCGCTATGGGAAAGCAAGCTATGGGAAATATTGCTTATAATCAGCTTTTTCGCATGGACACATTACTGTATCTCTTAGTGTACCCTCAACGGCCTTTGCTGACGACGAGAACAATTGAGTTGGTTCAATATGATAAGCTTGGTGCTGGACAAAATGCAACTGTTGCTGTGATGAGCTTCAGTGGATATGACATAGAGGATGCTATAGTTATGAATAAATCATCATTGGATCGAGGTTTTGGACGTTGTATTGTGATGAAAAAGAAGGGGACGATCATGCAGAGGTTTGAGAATAATGCATCTGAAAGAATCATCCCACCCAGAAGAGAGGGGTTTTCTGCCGAAAGAATGCAGGCATTGGATGATGATGGTATAGCTTCTCCAGGGCAAATTATTAGACAAGACGATTTCTTGGTAAACAAGCAAACACCACTAATTACTAGGGGGCCAACCACTGCAGGAGTAATACCGGATAGTCAGTATAGGCCAAGCCCCCTCAAACATGGTGGTCTTGCTGGAGAAACAGCAGTAGTAGATCGGGCAACGCTCTTCTCTGATAAGAATAGCAATCTATGCATCAATTTTATCATTCGTCAGACACGCCGGCCAGAGGTCGGTGACAAGTTCAGCAGCAGACATGGGCAGAAAGGTGTATGTGGTACCATTGTTCAGCAGGAGGATTTTGTTTTTTCTGAGCGTGGCATCTGCCCTGATCTGATTATGAATCCTCATGGGTTTCCAAGTCGAATGACTGTAGGTAAGATGATTGAGCTTTTAGGTGGTAAAGCTGGGGTGTCATGCGGCAGATTTCACTATGGGAGTGCCTTTGGGGAGCCGAGTGGCCATGCTGACAAAGTTGAAACAATAAGTGAAACACTAGTTAAGCATGGATTCAGCTACAGTGGGAAAGACTTGCTCTACTCAGGCATAACAGGTTTGCCACTGCAAGCATACATATTCATGGGGCCCATCTACTATCAGAAGTTAAAACACATGGTTCTTGATAAAATGCACGCACGAGGGTTTGGTCCCCGTGTTCTCGTGACTAGGCAGCCAACTGAAGGAAAGAGTCGAAATGGAGGATTAAGAGTCGGAGAAATGGAACGAGACTGCTTGATTGCTTATGGTGCTAGTAATTTGATATATGAACGCTTGATGCTTTCAAGTGACCCTTTTCAAGCTCAGGTATGTAGAAAATGTGGGATACTGGGATACTACAACCATAAATTGAAATCCGGCATATGTAGTGCCTGTAAAAATGGGGATAATATATCTACAATGAAATTGCCGTACGCTTGCAAGCTTCTATTTCAGGAACTCCAATCGATGAATATTGTTCCTCGTCTGAAATTGGCTGATGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_43627.p1 GENE.R_Transcript_43627~~R_Transcript_43627.p1 ORF type:complete len:1134 (+),score=216.49,RNA_pol_Rpb2_6|PF00562.24|1.3e-117,RNA_pol_Rpb2_1|PF04563.11|1.6e-51,RNA_pol_Rpb2_7|PF04560.16|2.7e-31,RNA_pol_Rpb2_4|PF04566.9|1.7e-22,RNA_pol_Rpb2_2|PF04561.10|7.9e-21,RNA_pol_Rpb2_3|PF04565.12|3.4e-19,RNA_pol_Rpb2_5|PF04567.13|5e-14 R_Transcript_43627:144-3545(+)
MDKQFLSAPVKSPVDKFQLIPEFLKVRGLVKEHLDSYNYFVNTGIKKIMRVNSEIRSTVDPEIYLKFKDIKVGEPSIVLDGVAEKITPHSCRLSDMTYAAPIEAHIEYVTGSRGEKEIREKKDVVIGKMPVMLRSHCCVLYGKDETELAKLGECPLDPGGYFIVKGNEKVIMMQEQLSNNRIIIDIDKKGNLIASVTSSTATLRSKTVIVMEKDKIYLQLNQFQGKVPILAVMKAMGLETDQEVVQMVGRDPRYSDLLLPSIEECAVCGVNTQQQALEFLEKKVKKPQYTVALPQKDNKAWKVLHDVFIAHVPVRKNNFRPKCIYTAVMLRRMLEAFLNKDAVDDKDYVGNKRFELSGQLLSLLFEDLFKTMNTEVKKKVDAILSKPSRSSRFDFSQHIIKDTISFGLERAISTGNWYVKRFRVDRKGVTQVLGRLSFIQAMGFLTKVQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHSSNSFLVIFNGLILGKHRRPQHFVTIMRRLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGVSRVKQEHMKELSDGVRTFNDFLRDGLIEYLDVNEENNALIALYEEDATPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMDTLLYLLVYPQRPLLTTRTIELVQYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKKGTIMQRFENNASERIIPPRREGFSAERMQALDDDGIASPGQIIRQDDFLVNKQTPLITRGPTTAGVIPDSQYRPSPLKHGGLAGETAVVDRATLFSDKNSNLCINFIIRQTRRPEVGDKFSSRHGQKGVCGTIVQQEDFVFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADKVETISETLVKHGFSYSGKDLLYSGITGLPLQAYIFMGPIYYQKLKHMVLDKMHARGFGPRVLVTRQPTEGKSRNGGLRVGEMERDCLIAYGASNLIYERLMLSSDPFQAQVCRKCGILGYYNHKLKSGICSACKNGDNISTMKLPYACKLLFQELQSMNIVPRLKLADA*

Click here to download the sequence:
Link to NCBI Protein BLAST