Transcript Information: R_Transcript_43650.p1


Annotated TAIR IDAT1G80000.1
Annotated Gene NameCASC3/Barentsz eIF4AIII binding
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:30093195-30096742 | Forward length=605
E-Value6E-132
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 138.089749246902
Replicate 230.165381821424
Replicate 333.724713246114
Condition 2: 8 Hour
Replicate 134.23841428612
Replicate 240.205056397238
Replicate 347.819036797947
Condition 3: 24 Hour
Replicate 145.948271364694
Replicate 238.400621453864
Replicate 343.214984502722


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_43650.p1 GENE.R_Transcript_43650~~R_Transcript_43650.p1 ORF type:complete len:703 (+),score=239.67,Btz|PF09405.6|1.6e+04,Btz|PF09405.6|1.6e+04,Btz|PF09405.6|5.5e-18 R_Transcript_43650:330-2438(+)
ATGGCTGGGGATGAAGAAGGACGACAACAAGAACAACAACATCAAGAGCAAGAACAAGAAGAAGAGACAGAGTATGAGAGTGATCCGGAAGAGACGAAGATGTCGTTGAAGATGCGATGGAGAGAAGCCAGTGATGATGAAGACGAACATGAAAATGATGAAGATGGTTATGCTAATGAAGATGACGATGAAGAGAAGAAGAAAAAAGTTTTAAGAGATGGAGGAGAGAGAGAGAAAGCGATTGTTGATTCGGATGGCGAATCGGACGGTCAAGGTGGAGCTGCTGAGTATGATGATGAAGAAGATGAAGAAGAGGAGGAGTATTATGATGAGGAATATGAGGAAGAGGAGGAAGAGCTTGTTGATGAGGAGAGAGAAATTGGTGGAGGTCATGTGGAGGTGGTGGTGAGTGCAAAGGCAGTGGAAGGCGAAGAAGAAGAAGAAGAGAAGAGAGAGAGTCAAGGGGAAGGTGAAGGTGAAGGAGGTGGTGAAGGTGCGGAGGAGAAGAAAGAGAATGAGCCGTTTGCCGTGCCGACTTCAGGTGCTTTTTATATGCATGATGATCGGTTTCGAGACAATGCTGCTGGTAGACACAGGAGGACATTTGGTGGTAGAAAATTATGGGAATCGAAGGATGAGAGGAAATGGGGCCATGACAAATTTGAGGAGATGAACATGCAGGAAAGGCATTATGAAGAGGGAAGGAGGTCTTCCAGAGGATTTTATCGAGGTCGTGGAAAAGGTAGAGGCACCGACCGTGGCTATGCTCGAGGGGGCAAGATGAGAGGATATGGTGGTAATAACAACCAAAATGCTTTACCTAAGGATGTGAGAGGAAGAGGGCATAGACGATATCAGCTTGCTATGAAGAACAAGAGTGAAACACTCCCATCACAAAACAAACAATCAGCAAAGTCAATTGAGAAAACTTCACATGCTGGTTCGGGGAGAGGTTCTGCTTCGATGACCAACTCAAATGTAGAACACGAGTCAGGTCCTGCCAAAAAAGTTGCCTCAAGCCTGAATTCTGCATCGCCTCCTTTTTATCCATCTGGTTCTTCCAGTAAGGATATTTCTTTGACACAGAAAAAGGAGGCACAATCTGGACATAATAATAACAGGAACTTTCGCCCCGCTGTTGTGGACCAGAACTTCTCTATGCCACTCTCAAATTCAATGATGCGAGGGAAGAATGTTGTCGATTCTATTGGTATGGACAAACTCCACATTGATGATTCTGTTCCTCCAGCCAGTGGAAGGTCTGTAAATAATGTTCATCAACCATCTGGTTCTTCATCATTGGGTGCTACTCAGATGCCTCAGGCCAGAGCTCGGGGTAGGGGTGTAGCTGTAACTGGTTCTCCCATGTTTCAGCCACCTCAAGCTAATAATCAAGTTAACAAAGTTCCTCCACCAGCTGCTCAATTTCCTCAGCGAAATCCTGTGCAAAACCGAGTTCAACCTCCTGTTCAGGCTCCAGCTCAGCTGGCAGGCCAGCGCTCCCTTGGTTCTTCACAGGGTTCTCCGCCAAAAGCAGGTTTGCCAATAAATGCATTTCAGCCTGGAGATGTTGAGTCTCGTACGGAATCTGGTAAGTCTAACACTGCTGTGGCTGGGAAAGGGAAAGGAACTGTCCAGGGAGCTGGACGGGGTTCGCTTATGTATACTGGTGGCCAAGTCATGGGATCGGGTGGAAATATGGGTGCTGGTCATGGTGACCCGAATCTTCCAGCCTTCTTCCCAGTTATGCAATTTGGGGCCCAGCATCCTGGTGGTGTTGGAGTTCCTGCTGTTGGAATGGCATTTCCTGGATATGTTGCACAGCCCAATGGTTTGGGAAATTCTGAAATGACTTGGTTGCCAGTACTAGCAAGTGCAGCAGGTGCCTTGGGAGCCACATATTGTCCACCTTATCTTGCCGTAGATGGTGCTTATCCTCCTCGGCCAACAGGACAACCGTCTGCCTTGCCTGCCCCTAGCAAAGATAACAATCAGAGTAATCCTAATATTGAAACAAAACCCCAGGAGAGATCTGAGGTTTCACATGGTGAGTTCAGCCAGAGACAAAATAAGCCTCGCAGATACTCGGAAATGAATTTTAGCCAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_43650.p1 GENE.R_Transcript_43650~~R_Transcript_43650.p1 ORF type:complete len:703 (+),score=239.67,Btz|PF09405.6|1.6e+04,Btz|PF09405.6|1.6e+04,Btz|PF09405.6|5.5e-18 R_Transcript_43650:330-2438(+)
MAGDEEGRQQEQQHQEQEQEEETEYESDPEETKMSLKMRWREASDDEDEHENDEDGYANEDDDEEKKKKVLRDGGEREKAIVDSDGESDGQGGAAEYDDEEDEEEEEYYDEEYEEEEEELVDEEREIGGGHVEVVVSAKAVEGEEEEEEKRESQGEGEGEGGGEGAEEKKENEPFAVPTSGAFYMHDDRFRDNAAGRHRRTFGGRKLWESKDERKWGHDKFEEMNMQERHYEEGRRSSRGFYRGRGKGRGTDRGYARGGKMRGYGGNNNQNALPKDVRGRGHRRYQLAMKNKSETLPSQNKQSAKSIEKTSHAGSGRGSASMTNSNVEHESGPAKKVASSLNSASPPFYPSGSSSKDISLTQKKEAQSGHNNNRNFRPAVVDQNFSMPLSNSMMRGKNVVDSIGMDKLHIDDSVPPASGRSVNNVHQPSGSSSLGATQMPQARARGRGVAVTGSPMFQPPQANNQVNKVPPPAAQFPQRNPVQNRVQPPVQAPAQLAGQRSLGSSQGSPPKAGLPINAFQPGDVESRTESGKSNTAVAGKGKGTVQGAGRGSLMYTGGQVMGSGGNMGAGHGDPNLPAFFPVMQFGAQHPGGVGVPAVGMAFPGYVAQPNGLGNSEMTWLPVLASAAGALGATYCPPYLAVDGAYPPRPTGQPSALPAPSKDNNQSNPNIETKPQERSEVSHGEFSQRQNKPRRYSEMNFSQ*

Click here to download the sequence:
Link to NCBI Protein BLAST