Transcript Information: R_Transcript_437080.p1


Annotated TAIR IDAT5G11700.2
Annotated Gene NameBEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 8203 Blast hits to 3102 proteins in 389 species: Archae - 3; Bacteria - 5624; Metazoa - 852; Fungi - 139; Plants - 704; Viruses - 77; Other Eukaryotes - 804 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:3762961-3771123 | Reverse length=1476
E-Value0.0002
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.57716872584091
Replicate 20.49793597825213
Replicate 30.45270232403463
Condition 2: 8 Hour
Replicate 10.096782074890297
Replicate 20
Replicate 30.071745496523269
Condition 3: 24 Hour
Replicate 10.27222696317436
Replicate 20.087174936326393
Replicate 30.17302533349326


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_437080.p1 GENE.R_Transcript_437080~~R_Transcript_437080.p1 ORF type:5prime_partial len:253 (+),score=26.94,GCC2_GCC3|PF07699.9|0.00048,GCC2_GCC3|PF07699.9|1e-07,GCC2_GCC3|PF07699.9|0.017,GCC2_GCC3|PF07699.9|3.1e-11,GCC2_GCC3|PF07699.9|2.4e-07,GCC2_GCC3|PF07699.9|4.2e-07,GCC2_GCC3|PF07699.9|0.0004,GCC2_GCC3|PF07699.9|4.9e-05,NCD3G|PF07562.10|1.5,NCD3G|PF07562.10|0.002,NCD3G|PF07562.10|0.31,NCD3G|PF07562.10|2.4e-05,NCD3G|PF07562.10|0.00059,NCD3G|PF07562.10|0.19,NCD3G|PF07562.10|0.032,TNFR_c6|PF00020.14|3.4,TNFR_c6|PF00020.14|0.044,TNFR_c6|PF00020.14|0.54,TNFR_c6|PF00020.14|0.0039,TNFR_c6|PF00020.14|6.4,TNFR_c6|PF00020.14|2,TNFR_c6|PF00020.14|3.8,TNFR_c6|PF00020.14|1e+02 R_Transcript_437080:2-760(+)
TCGAATCCTTTGCAATTCGGGTCAGTAGTTTTTCAAACCTTTGAAATGATGAAATTCTCTGTTGTTTTCCTTGTTTTAGCTCTTGTCGCTTATTCATACTCTCAATCTGTTATTTGCCCTGTTGGTACTTATAGTTCCAACGGATATTCTCCATGTTGCCCTTGCTTTCCAGGAACCTACTCAGCTGTTGAAGGAACCACTGTTTGCCCACCATGTGCCACAGGTTATTATCAATCAAATTACGGTTCAACCTCCTGCACTGTTTGTCCAAACGGTACTTTCTCTGCTGATGTTGGAGAAGTAACTTGCAGTCCATGCCCCGATGGATCATATTGTGCTAATGGTGCTGTCACTAACCTCCTCTGCCCACCAGGTAGCTACTCAAAATCCAATGCTGCTGCTTGCACTCAATGTGCTCCTGGTACCTATCAAGCCAATGCTGGTTCTGATCAATGTCTTCCTTGCCCAGTTGGAACTTACTCACCTTCCGCTGGAGCTTCTAGTTGTATCACTTGCCCATCTGGATATTATTCCAATACCACCGGTAACACTGCTTGCAGTGCTTGCAGCCCAGGATATTTCAGTAACCAAGCTATTAGCGTAGTTAACTGTATTGCATGCAGTCCAATGTATTATTCAGGTGGAAACGGATGGACCGTCTGCTCTCCATGCCCATATGGTTCTTACAACACTGATTCTGGATCAAGCAGTTGCACCACTTGTCCCAACAGTTCCACTTGTGGATGTCAAGAAAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_437080.p1 GENE.R_Transcript_437080~~R_Transcript_437080.p1 ORF type:5prime_partial len:253 (+),score=26.94,GCC2_GCC3|PF07699.9|0.00048,GCC2_GCC3|PF07699.9|1e-07,GCC2_GCC3|PF07699.9|0.017,GCC2_GCC3|PF07699.9|3.1e-11,GCC2_GCC3|PF07699.9|2.4e-07,GCC2_GCC3|PF07699.9|4.2e-07,GCC2_GCC3|PF07699.9|0.0004,GCC2_GCC3|PF07699.9|4.9e-05,NCD3G|PF07562.10|1.5,NCD3G|PF07562.10|0.002,NCD3G|PF07562.10|0.31,NCD3G|PF07562.10|2.4e-05,NCD3G|PF07562.10|0.00059,NCD3G|PF07562.10|0.19,NCD3G|PF07562.10|0.032,TNFR_c6|PF00020.14|3.4,TNFR_c6|PF00020.14|0.044,TNFR_c6|PF00020.14|0.54,TNFR_c6|PF00020.14|0.0039,TNFR_c6|PF00020.14|6.4,TNFR_c6|PF00020.14|2,TNFR_c6|PF00020.14|3.8,TNFR_c6|PF00020.14|1e+02 R_Transcript_437080:2-760(+)
SNPLQFGSVVFQTFEMMKFSVVFLVLALVAYSYSQSVICPVGTYSSNGYSPCCPCFPGTYSAVEGTTVCPPCATGYYQSNYGSTSCTVCPNGTFSADVGEVTCSPCPDGSYCANGAVTNLLCPPGSYSKSNAAACTQCAPGTYQANAGSDQCLPCPVGTYSPSAGASSCITCPSGYYSNTTGNTACSACSPGYFSNQAISVVNCIACSPMYYSGGNGWTVCSPCPYGSYNTDSGSSSCTTCPNSSTCGCQEN*

Click here to download the sequence:
Link to NCBI Protein BLAST