Transcript Information: R_Transcript_4378.p1


Annotated TAIR IDAT3G60380.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in 424 species: Archae - 6; Bacteria - 372; Metazoa - 2603; Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes - 2147 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:22316913-22319144 | Reverse length=743
E-Value4E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.83259120144331
Replicate 20.29468491812348
Replicate 30.20093629470309
Condition 2: 8 Hour
Replicate 10.085915315604369
Replicate 20.27460732085667
Replicate 30.79612327282399
Condition 3: 24 Hour
Replicate 10.92636766006525
Replicate 20.38693436650136
Replicate 31.2671829029256


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_4378.p1 GENE.R_Transcript_4378~~R_Transcript_4378.p1 ORF type:3prime_partial len:570 (+),score=124.88 R_Transcript_4378:52-1758(+)
ATGCTACTCAATCACATTTCAACGTTTAATCCTTTTTCTCTCTCTATTCCCACCTTTTTCCTCCATTTTTTTAACACACTTTTCTCTTTCTTTTGTCTCTTTCCTCCACTGGATTATACTCTCTATCTTCACTCTCGAACACCGGAAAAAAAAAAAAAACTTGGCTTTGAATTTTACAGAAAATCTATGGAAGATGATCCATATCGTTACAGAAAGCTCCATTTTGGTCAGCAAAAGCTTAATAATCAATTTCAAGAAAACCCCACAAAGAGAGGTAAATCTTGCTCACATTTGTTTCTCAAATTTCTATTCATTGCTCTGTTTCTTTCTCTCATTCCCCTGTTTCCTTCTCAAGCTCCTGAATTTGTTAGTGACACTATTTTTGCCAAAACTTGGGAGCTTTTTCATTTGCTCATAATTGGCATTGCTTTATCTTATGGCTTGTTTTGCCGCCCCAAAAAAAACTCCCAAATTCCAACCAAACCCCAGATTTCTCAACCATATGGGGCTAATATTCTTCACCATTCTTCAATTTTTGACTATGAGAATGAAAACCCATCTGCGGTTTCTGAGAAAAATGCAATCCCAACCCAAAGTTGTAATCGTTCTTATTATAGAACTGAACCCTTTGTGGTTGTGGGCAGAGAGGGTAGTAAAAACTATAATGAGAGGCCTTTGGGTTTGCCTGTTAGGAGCTTAAGGTCAAGAGTTTTGGATAGTGACAGTAGTAGTGGTGACAGTGATGATGATGAAGAGGGTCTTAGTGAATGTGAATCTGATTTTAGTAGTGTTTTTCCAAGAAATGCGAAAGGTGAGAACTTTGAAGGACATGAGCAAAAACCAAGGTCCATGAGGGTGAATTTCATGGTTGAGAATGATAATGTTGGGGAGAAATCTGAGCCTAAAGAGCTGAAATCTCAGTCTTTTAGGTCACCAACACTAGGATCAAATTGTCAAAAAAAATTTGGGTTTTGTTCTTGGCTGCCAGATTCACCAAATTGGCAACAACAACAACAACAACAGCCAATGTGGATCCCACCAAATTTGGATGGACATAATTCTTGGAGGGTAGATAATTTTGGAATGCCGTTTTCTGATCTTTCTACTCAAGGGAATGATTTCAATGTGATGGGTATATCACCAAACTTGCATGGTGGAAATGTAAGTGTAGAAAAGCCCATGTTTTTCATGCCTTCAGGTGGAACTCCTGGTTCAAATTCAATGCCAGATTTCACTGGTGATTGCTCTTCAAGGCCAAGAAAACTTGGTCATGAGAATGTAGTTTTGTTCCAGCCTTTTTCTGGTTTCTCCAGACAAGGGAGTGATCCTAGTGTGATGGGTGTTTCACCAAACTTACAGAATGGAAATTTAATGCCTTCAACTGATGATTTAAGTTCAAGAAAACTCAGTCATGAGAATGTGAATTTGTGTCCACCATTTTCTGATTTCTCAACTCAAGGGAATGATCATAATATGATGGGTATTTCACCAAACTTACAGAGTGGAAATCTAAGTGCAGAAAAACCCCAGTTTTTCATGCCTCCGGCTGTGGTTTCTGCTGCAAAGCCAGCTCCCACTGATGATTGTGTATCAAGGTCAAGAAGATTCAGTCATGAGAATGTGAGGTTTTGCCAAACAGCAAACTTGGAGAATGGAATTTCAGATGGGGAGAAAGCCAATATATTCATGCCTTCAGCTGTAGCTCCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_4378.p1 GENE.R_Transcript_4378~~R_Transcript_4378.p1 ORF type:3prime_partial len:570 (+),score=124.88 R_Transcript_4378:52-1758(+)
MLLNHISTFNPFSLSIPTFFLHFFNTLFSFFCLFPPLDYTLYLHSRTPEKKKKLGFEFYRKSMEDDPYRYRKLHFGQQKLNNQFQENPTKRGKSCSHLFLKFLFIALFLSLIPLFPSQAPEFVSDTIFAKTWELFHLLIIGIALSYGLFCRPKKNSQIPTKPQISQPYGANILHHSSIFDYENENPSAVSEKNAIPTQSCNRSYYRTEPFVVVGREGSKNYNERPLGLPVRSLRSRVLDSDSSSGDSDDDEEGLSECESDFSSVFPRNAKGENFEGHEQKPRSMRVNFMVENDNVGEKSEPKELKSQSFRSPTLGSNCQKKFGFCSWLPDSPNWQQQQQQQPMWIPPNLDGHNSWRVDNFGMPFSDLSTQGNDFNVMGISPNLHGGNVSVEKPMFFMPSGGTPGSNSMPDFTGDCSSRPRKLGHENVVLFQPFSGFSRQGSDPSVMGVSPNLQNGNLMPSTDDLSSRKLSHENVNLCPPFSDFSTQGNDHNMMGISPNLQSGNLSAEKPQFFMPPAVVSAAKPAPTDDCVSRSRRFSHENVRFCQTANLENGISDGEKANIFMPSAVAP

Click here to download the sequence:
Link to NCBI Protein BLAST