Transcript Information: R_Transcript_43857.p1


Annotated TAIR IDAT1G59760.1
Annotated Gene NameRNA helicase, ATP-dependent, SK12/DOB1 protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:21984571-21990110 | Reverse length=988
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.083024619915
Replicate 211.754432491122
Replicate 315.970358157567
Condition 2: 8 Hour
Replicate 117.326106310226
Replicate 219.382533375346
Replicate 322.8925619895
Condition 3: 24 Hour
Replicate 121.428879379033
Replicate 217.006188176813
Replicate 321.728272914984


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_43857.p1 GENE.R_Transcript_43857~~R_Transcript_43857.p1 ORF type:5prime_partial len:961 (+),score=224.73,rRNA_proc-arch|PF13234.2|2.6e-68,DSHCT|PF08148.8|2.6e-48,DEAD|PF00270.25|8.7e-18,DEAD|PF00270.25|1.6e+02,Helicase_C|PF00271.27|3.3e-06 R_Transcript_43857:3-2885(+)
ACAACAGTAGCTTGTGTTCATGATGTTTCTTACCCTCAAGGTTACATCTTTACTAACCCTTCAACAACAACAACAACAACCACCACCCCAGCTAGGGAATTCCCCTTCACTCTTGACCCTTTTCAGGCTGAAGCTATCAAGTGCCTTGAAGCTAGTGAATCTGTCTTGGTGTCAGCCCACACATCAGCTGGAAAAACAGTCGTAGCATTATATGCTATAGCTATGTCACTACGTAACAAGCAAAGGGTGATATATACTTCACCAATCAAGGCACTTAGCAACCAGAAATATCGGGAATTCAAAGAAGAGTTTTCAGATGTTGGTTTGATGACGGGGGATGTCACTATTGATCCCAATGCATCTTGCTTGGTGATGACAACAGAAATCTGGCGGAGTATGCAATATAGAGGATCAGAAATTACAAGAGAGGTGGCATGGGCAATATTTGATGAGGTCCATTACATGCGTGACAGGGAACGGGGTGTGGTATGGGAAGAAAGCATAGTAATGGCTCCAAAGAACTCTCGGTTTGTTTTTCTTTCTGCAACTGTGCCAAATGCCAAGGAGTTTGCAGATTGGGTTGCAAAGGTCCACCAGCAGCCATGTCATATTGTTTATACAGATTATAGGCCAACACCACTTCAGCACTATATTTTTCCTTCAGGTGGTAAAGGGCTGTACTTAGTGGTAGATGAAAAGGGGAAATTTCGTGAAGATAGTTTCCAGAAAGCCTTGAATGCTCTTGTCCCTGCCGCTGAGGGTGACAAGAAGAGGGAGAATGGAAAGTCGCAAAAGGGTGTGGCAGTTGGTAAGCTAGGAGAAGAAAGTGATATATTCAAGTTGGTGAAAATGCTTATACAGCGTCAGTATGACCCTGTTATATTGTTTAGCTTCAGCAAGAGAGAGTGTGAATTTCTTGCCATGCAGATGGCAAAGATGGATTTAAATGGGGATGATGAGAAGGAGAATATACAAAATATCTTCTCAAGTGCAATGGACATGTTGTCTGATGATGACAAGAAACTACCTCAGGTTTCAAATATGTTGCCATTGTTGAAACGTGGTATTGGGGTTCACCATTCTGGATTGCTTCCAATTCTGAAGGAAGTAATTGAGATTCTATTTCAAGAAGGGCTAATCAAGTGTTTATTTGCAACAGAGACCTTTAGTATTGGGTTGAACATGCCTGCAAAGACTGTTGTTTTTACGAACGTTCGTAAGTTCGATGGCGACAAGTTCAGATGGATATCCAGTGGAGAGTACATACAAATGAGTGGCCGTGCTGGTCGGCGTGGTATTGATGAGCGGGGGATTTGCATTCTAATGGTAGATGAGAAGCTTGAACCTTCAACAGCTAAAATGATGCTGAAGGGAAATGCCGATAGTTTAAACAGTGCCTTCCACCTTAGCTACAACATGCTCCTGAATCAGTTGCGCTGTGAAGACAACAACCCTGAAAATTTGCTCCGTGACTCATTCTATCAGTTCCAATCAGATCGTGCCATACCTGATCTTGAGAGGCAAGCTAAGCAATTTGAAGAAGAAAGGGATTCAATCGTTATTGAAGAAGAAGATAGCTTGAAGAACTATTACTCTTTGGTAGAGCAGTGCAAAAGTTTAAAAAAAGATGTACGTGATATTGTTTTGTCACCAAAGTACTGCTTACCATTCTTGCAGCCTGGAAGACTTGTGTGCATTGAATGCACAAGGACTGATGAAGATTCAGCACAGTTCTCAATCAAGGATGACGTAACGTGGGGTGTCATTATAAATTTCGAAAAGGTGATGAGTAGTTCAGAAGATGAAGCAAGTAAAAAGCCAGAAGACGCAAATTACACTGTTCATGTTCTTACAAGGTTTATGGTGAGCAAAGAGAATGGGGCAAAGAGAACAACCAAAATCATTCCGCTGAAGGACCCTGGAGAGCCTCTTGTAGTGTCTGTTCCACTTTCCCAGATATACAGTTTGAGTAGCATTCGTGTGATCATATCAAAGGATCTCTTGCGGGTGGAAGCTAAAGAAAACACTTTAAAGAAGGTTTCAGAAATACTTGCAAGATTCTCGAAGGAAGGGGTTCCGTTGTTGGATCCTGAAGAGGATATGAAGGTTCAAAGCGGCTCTTACAGAAAGGCTGTTCGTCGAATTGAAGCTTTAGAGAGTCTGTTTGACAAGCATGAAGTAGCGAAATCACCATTGATTGAGCAGAAACTCAAGGTGTTACATCAGAAGCAAGAACTTACTGCCAAGATAAAATCTATTAAGAGACAAATGCGTTCCTCAACTGTATTGGCATTCAAGGGTGAACTCAAAGCAAGGAAACGGGTGCTAAGGAAGCTTGGATACATCACCAGTGATGATGTTGTGGAGCTGAAGGGGAAGGTTGCTTGTGAAATAAGTAGTGCTGATGAGTTGACATTGACAGAGCTTATGTTCAATGGTGTTTTCAAAGACATAAAAATAGAAGACATGGTGGCTCTTTTGTCTTGTCTTGTGTGGCAGGAGAAGCTTCAAGATGCTCAGAAGCCTAGAGAAGACCTTGAGCTGCTTTTTGCACAATTACAAGATACAGCAAGGAGGGTTGCCAAAGTTCAGCTTGAATGCAAGGTCCAAATTGATGTTGATAGCTTTGTGAGCTCATTCCGGCCTGATATCATGGAAGCAGTCTATGCTTGGGCCAAAGGATCCAAATTTTATGAGATCATGGAGATTTCACAGGTCTTTGAAGGTAGCTTGATCAGGGCCATCAGGAGATTGGAAGAAGTCCTTCAGCAACTCATTCTAGCAGCTCAATCTATTGGGGAGATTGAGTTAGAAGCTAAGTTTGAAGACGCTGTTACCAAGATTAAGAGGGATATCGTCTTCGCAGCATCACTGTACCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_43857.p1 GENE.R_Transcript_43857~~R_Transcript_43857.p1 ORF type:5prime_partial len:961 (+),score=224.73,rRNA_proc-arch|PF13234.2|2.6e-68,DSHCT|PF08148.8|2.6e-48,DEAD|PF00270.25|8.7e-18,DEAD|PF00270.25|1.6e+02,Helicase_C|PF00271.27|3.3e-06 R_Transcript_43857:3-2885(+)
TTVACVHDVSYPQGYIFTNPSTTTTTTTTPAREFPFTLDPFQAEAIKCLEASESVLVSAHTSAGKTVVALYAIAMSLRNKQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYRGSEITREVAWAIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYIFPSGGKGLYLVVDEKGKFREDSFQKALNALVPAAEGDKKRENGKSQKGVAVGKLGEESDIFKLVKMLIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDDEKENIQNIFSSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKLEPSTAKMMLKGNADSLNSAFHLSYNMLLNQLRCEDNNPENLLRDSFYQFQSDRAIPDLERQAKQFEEERDSIVIEEEDSLKNYYSLVEQCKSLKKDVRDIVLSPKYCLPFLQPGRLVCIECTRTDEDSAQFSIKDDVTWGVIINFEKVMSSSEDEASKKPEDANYTVHVLTRFMVSKENGAKRTTKIIPLKDPGEPLVVSVPLSQIYSLSSIRVIISKDLLRVEAKENTLKKVSEILARFSKEGVPLLDPEEDMKVQSGSYRKAVRRIEALESLFDKHEVAKSPLIEQKLKVLHQKQELTAKIKSIKRQMRSSTVLAFKGELKARKRVLRKLGYITSDDVVELKGKVACEISSADELTLTELMFNGVFKDIKIEDMVALLSCLVWQEKLQDAQKPREDLELLFAQLQDTARRVAKVQLECKVQIDVDSFVSSFRPDIMEAVYAWAKGSKFYEIMEISQVFEGSLIRAIRRLEEVLQQLILAAQSIGEIELEAKFEDAVTKIKRDIVFAASLYL*

Click here to download the sequence:
Link to NCBI Protein BLAST